TreatCFM001645's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.002925532 | cazy family |
| Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase | 0.003899268 | kinase family |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.004514645 | GO:0016818 |
| mannosylglycoprotein endo-beta-mannosidase activity | 0.004514645 | GO:0033947 |
| Fanconi anemia pathway | 0.004602101 | KEGG pathway |
| interstrand cross-link repair | 0.010424761 | GO:0036297 |
| receptor signaling protein serine/threonine kinase activity | 0.015787251 | GO:0004702 |
| nuclease activity | 0.015787251 | GO:0004518 |
| Transcription_related, Transcription factor: GRAS | 0.027463148 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000432 | AT2G05590 (3.00E-34) | TLD-domain containing nucleolar protein |
| CRO_T016326 | AT1G48360 (2.00E-66) | zinc ion binding; nucleic acid binding; hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides |
| CRO_T026070 | AT1G07530 (2.00E-167) | ATGRAS2|GRAS (GAI, RGA, SCR) 2; SCL14|SCARECROW-like 14 |
| CRO_T029702 | AT1G09010 (0) | glycoside hydrolase family 2 protein |
| CRO_T030679 | AT5G13950 (1.00E-109) | unknown protein |
| CRO_T033821 | AT4G14480 (6.00E-49) | Protein kinase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001264 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides nuclease activity interstrand cross-link repair box C/D snoRNP complex U4/U6 x U5 tri-snRNP complex Fanconi anemia pathway precatalytic spliceosome maturation of SSU-rRNA maturation of LSU-rRNA zinc ion binding small-subunit processome nucleic acid phosphodiester bond hydrolysis RNA processing mRNA splicing, via spliceosome cytosolic large ribosomal subunit Spliceosome | details |
| TreatCFM001349 | interstrand cross-link repair Fanconi anemia pathway hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides nuclease activity nucleic acid phosphodiester bond hydrolysis | details |
| TreatCFM001396 | MicroRNAs in cancer L-amino acid transport L-alpha-amino acid transmembrane transport L-amino acid transmembrane transporter activity response to stress antiporter activity | details |
| TreatCFM001492 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc alpha-1,3-mannosyltransferase activity galactoside 2-alpha-L-fucosyltransferase activity mannosylglycoprotein endo-beta-mannosidase activity ceramide metabolic process L-amino acid transport fucosylation nucleocytoplasmic transport xyloglucan biosynthetic process mannosylation L-alpha-amino acid transmembrane transport hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides plant-type cell wall biogenesis fatty acid β-oxidation II (peroxisome) protein N-glycosylation (eukaryotic, high mannose) unsaturated, even numbered fatty acid β-oxidation L-amino acid transmembrane transporter activity MicroRNAs in cancer translation | details |
| TreatCFM002088 | Spliceosome Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding RNA polymerase II core promoter proximal region sequence-specific DNA binding Transcription_related, Transcription factor: GRAS MAPK signaling pathway - plant spliceosomal complex | details |
Expression profiles
 Show details about module gene expression profiling |