TreatCFM001650's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| rRNA (cytosine-N4-)-methyltransferase activity | 0.000975177 | GO:0071424 |
| thiamine-phosphate diphosphorylase activity | 0.000975177 | GO:0004789 |
| phosphomethylpyrimidine kinase activity | 0.000975177 | GO:0008972 |
| 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis | 0.001462766 | plantCyc |
| hydroxymethylpyrimidine salvage | 0.001462766 | plantCyc |
| thiamine diphosphate biosynthesis IV (eukaryotes) | 0.001949922 | plantCyc |
| Thiamine metabolism | 0.002834156 | KEGG pathway |
| thiamine biosynthetic process | 0.004386353 | GO:0009228 |
| rRNA base methylation | 0.004386353 | GO:0070475 |
| membrane | 0.013548977 | GO:0016020 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008634 | AT5G54200 (2.00E-103) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T011260 | AT3G50910 (1.00E-84) | unknown protein |
| CRO_T012127 | - | - |
| CRO_T020989 | AT5G10910 (6.00E-121) | mraW methylase family protein |
| CRO_T031834 | AT1G22940 (0) | TH1|THIAMINE REQUIRING 1; THIE|THIAMINEE |
| CRO_T033281 | AT3G47590 (1.00E-88) | alpha/beta-Hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000271 | Transcription_related, Transcription regulator: SOH1 L-alanine degradation II (to D-lactate) L-glutamate degradation I Cell cycle - yeast plant-type vacuole membrane glutamate dehydrogenase [NAD(P)+] activity cellular potassium ion homeostasis regulation of protein kinase activity Cell cycle | details |
| TreatCFM000297 | formation of glycosidic bonds, GlycosylTransferases: GTnc alpha-1,4-glucan synthase activity starch synthase activity amylopectin biosynthetic process glycogen (starch) synthase activity | details |
| TreatCFM000768 | carbohydrate binding formaldehyde oxidation II (glutathione-dependent) acetaldehyde biosynthesis I pyruvate fermentation to ethanol II cobalt ion binding | details |
| TreatCFM001212 | glucokinase activity mannokinase activity glucose binding cellular glucose homeostasis glucose 6-phosphate metabolic process fructokinase activity carbohydrate phosphorylation glycolytic process Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity Carbon metabolism carbamoyl-phosphate synthase complex urea cycle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I 'de novo' pyrimidine nucleobase biosynthetic process L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I arginine biosynthetic process glutamine metabolic process Pyrimidine metabolism cytosol | details |
| TreatCFM001213 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family rRNA (cytosine-N4-)-methyltransferase activity mannokinase activity ATPase binding glucokinase activity glucose binding regulation of barrier septum assembly folic acid-containing compound metabolic process fructokinase activity cellular glucose homeostasis photosystem II repair photosystem II assembly chloroplast fission glucose 6-phosphate metabolic process rRNA base methylation Wnt signaling pathway fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) regulation of cell shape carbohydrate phosphorylation oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Endocytosis palmitate biosynthesis II (bacteria and plants) glycolytic process | details |
| TreatCFM001709 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family MAPK signaling pathway - yeast rRNA (cytosine-N4-)-methyltransferase activity Transcription_related, Transcription factor: bZIP ATPase binding regulation of barrier septum assembly chloroplast fission response to cold regulation of cell shape rRNA base methylation Wnt signaling pathway Endocytosis cell division defense response to bacterium peptidyl-serine phosphorylation Plant hormone signal transduction | details |
| TreatCFM001866 | photosystem II assembly gene expression photosystem II repair cellular nitrogen compound metabolic process cellular macromolecule metabolic process chloroplast thylakoid lumen mRNA surveillance pathway primary metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |