TreatCFM000271's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: SOH1 | 0.001535395 | TF family |
| L-alanine degradation II (to D-lactate) | 0.010337171 | plantCyc |
| L-glutamate degradation I | 0.010337171 | plantCyc |
| Cell cycle - yeast | 0.032100819 | KEGG pathway |
| plant-type vacuole membrane | 0.034746213 | GO:0009705 |
| glutamate dehydrogenase [NAD(P)+] activity | 0.041785698 | GO:0004353 |
| cellular potassium ion homeostasis | 0.049946583 | GO:0030007 |
| regulation of protein kinase activity | 0.049946583 | GO:0045859 |
| Cell cycle | 0.049946583 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000587 | - | - |
| CRO_T000893 | - | - |
| CRO_T001118 | - | - |
| CRO_T002404 | - | - |
| CRO_T003373 | AT2G27960 (3.00E-14) | CKS1|cyclin-dependent kinase-subunit 1 |
| CRO_T004236 | - | - |
| CRO_T004256 | - | - |
| CRO_T009117 | - | - |
| CRO_T011799 | - | - |
| CRO_T012047 | - | - |
| CRO_T012235 | AT5G65490 (2.00E-14) | unknown protein |
| CRO_T016895 | AT3G03910 (2.00E-176) | GDH3|glutamate dehydrogenase 3 |
| CRO_T017769 | - | - |
| CRO_T019661 | - | - |
| CRO_T022132 | - | - |
| CRO_T023659 | - | - |
| CRO_T027511 | - | - |
| CRO_T027893 | AT4G25310 (3.00E-55) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T028131 | - | - |
| CRO_T028492 | - | - |
| CRO_T028761 | - | - |
| CRO_T029858 | - | - |
| CRO_T029995 | - | - |
| CRO_T030094 | AT4G18160 (1.00E-49) | ATKCO6|CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6 |
| CRO_T032374 | - | - |
| CRO_T033281 | AT3G47590 (1.00E-88) | alpha/beta-Hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000015 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) phytol salvage pathway | details |
| TreatCFM000060 | cellular potassium ion homeostasis plant-type vacuole membrane voltage-gated potassium channel activity Transcription_related, Transcription factor: B3 potassium ion transmembrane transport | details |
| TreatCFM000121 | sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity geraniol and geranial biosynthesis Phenylpropanoid biosynthesis secologanin and strictosidine biosynthesis cellular potassium ion homeostasis voltage-gated potassium channel activity plant-type vacuole membrane zinc ion binding farnesylcysteine salvage pathway acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis potassium ion transmembrane transport oxidation-reduction process | details |
| TreatCFM000147 | details | |
| TreatCFM000215 | details | |
| TreatCFM000297 | formation of glycosidic bonds, GlycosylTransferases: GTnc alpha-1,4-glucan synthase activity starch synthase activity amylopectin biosynthetic process glycogen (starch) synthase activity | details |
| TreatCFM000300 | Monoterpenoid biosynthesis mitochondrial translational termination cellular potassium ion homeostasis rescue of stalled ribosome interspecies interaction between organisms photosystem II repair photosystem II assembly 2-Oxocarboxylic acid metabolism primary root development translation release factor activity, codon nonspecific arginine biosynthetic process | details |
| TreatCFM000337 | details | |
| TreatCFM000352 | Transcription_related, Transcription factor: Orphans Plant hormone signal transduction kinase activity | details |
| TreatCFM000445 | gibberellin biosynthesis III (early C-13 hydroxylation) regulation of protein kinase activity Cell cycle Cell cycle - yeast Diterpenoid biosynthesis cyclin-dependent protein serine/threonine kinase regulator activity cell division | details |
| TreatCFM000579 | mannose-6-phosphate isomerase activity nucleotidase activity Transcription_related, Transcription regulator: TAZ zinc ion binding cellular potassium ion homeostasis GDP-mannose biosynthetic process D-mannose degradation GDP-mannose biosynthesis guanosine nucleotides degradation I guanosine nucleotides degradation II mannitol biosynthesis transcription cofactor activity voltage-gated potassium channel activity histone acetyltransferase activity L-ascorbate biosynthesis I (L-galactose pathway) mannitol degradation II pyrimidine salvage pathway adenosine nucleotides degradation I | details |
| TreatCFM000580 | Transcription_related, Transcription regulator: TAZ nucleotidase activity guanosine nucleotides degradation I guanosine nucleotides degradation II pyrimidine salvage pathway cellular potassium ion homeostasis adenosine nucleotides degradation I transcription cofactor activity histone acetyltransferase activity voltage-gated potassium channel activity Ubiquitin_Proteasome_system, E3 adaptor: BTB histone acetylation embryo sac development plant-type vacuole membrane potassium ion transmembrane transport pollen development Purine metabolism calmodulin binding dephosphorylation | details |
| TreatCFM000682 | cellular potassium ion homeostasis ncRNA processing apigenin glycosides biosynthesis genistin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis curcumin glucoside biosynthesis sesaminol glucoside biosynthesis quercetin gentiotetraside biosynthesis RNA transport Transcription_related, Transcription factor: HSF | details |
| TreatCFM001212 | glucokinase activity mannokinase activity glucose binding cellular glucose homeostasis glucose 6-phosphate metabolic process fructokinase activity carbohydrate phosphorylation glycolytic process Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity Carbon metabolism carbamoyl-phosphate synthase complex urea cycle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I 'de novo' pyrimidine nucleobase biosynthetic process L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I arginine biosynthetic process glutamine metabolic process Pyrimidine metabolism cytosol | details |
| TreatCFM001213 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family rRNA (cytosine-N4-)-methyltransferase activity mannokinase activity ATPase binding glucokinase activity glucose binding regulation of barrier septum assembly folic acid-containing compound metabolic process fructokinase activity cellular glucose homeostasis photosystem II repair photosystem II assembly chloroplast fission glucose 6-phosphate metabolic process rRNA base methylation Wnt signaling pathway fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) regulation of cell shape carbohydrate phosphorylation oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Endocytosis palmitate biosynthesis II (bacteria and plants) glycolytic process | details |
| TreatCFM001335 | integral component of membrane oxoglutarate dehydrogenase complex formation of glycosidic bonds, GlycosylTransferases: GTnc dihydrolipoyllysine-residue succinyltransferase activity GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity 2-oxoglutarate decarboxylation to succinyl-CoA protein N-glycosylation (eukaryotic, high mannose) cyclin-dependent protein serine/threonine kinase regulator activity Cell cycle - yeast oligosaccharide-lipid intermediate biosynthetic process mannosylation plant-type cell wall biogenesis regulation of protein kinase activity Cell cycle protein N-linked glycosylation response to osmotic stress magnesium ion transmembrane transport magnesium ion transport magnesium ion transmembrane transporter activity tricarboxylic acid cycle N-Glycan biosynthesis cell division endoplasmic reticulum membrane response to abscisic acid | details |
| TreatCFM001650 | rRNA (cytosine-N4-)-methyltransferase activity thiamine-phosphate diphosphorylase activity phosphomethylpyrimidine kinase activity 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis hydroxymethylpyrimidine salvage thiamine diphosphate biosynthesis IV (eukaryotes) Thiamine metabolism thiamine biosynthetic process rRNA base methylation membrane Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001866 | photosystem II assembly gene expression photosystem II repair cellular nitrogen compound metabolic process cellular macromolecule metabolic process chloroplast thylakoid lumen mRNA surveillance pathway primary metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |