TreatCFM001703's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: Whirly | 0.001595745 | TF family |
| defense response to fungus | 0.016168745 | GO:0050832 |
| transcription from RNA polymerase II promoter | 0.016168745 | GO:0006366 |
| positive regulation of transcription from RNA polymerase II promoter | 0.016168745 | GO:0045944 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.019577886 | cazy family |
| positive regulation of transcription, DNA-templated | 0.021193275 | GO:0045893 |
| core promoter sequence-specific DNA binding | 0.02697784 | GO:0001046 |
| transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 0.03273461 | GO:0001228 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003013 | AT5G35560 (3.00E-59) | DENN (AEX-3) domain-containing protein |
| CRO_T005897 | AT2G02740 (4.00E-72) | ATWHY3|A. THALIANA WHIRLY 3; PTAC11|PLASTID TRANSCRIPTIONALLY ACTIVE11; WHY3|WHIRLY 3 |
| CRO_T008625 | AT5G58010 (8.00E-19) | LRL3|LJRHL1-like 3 |
| CRO_T009453 | AT3G03380 (2.00E-105) | DEG7|degradation of periplasmic proteins 7; DegP7|DegP protease 7 |
| CRO_T009905 | AT5G40720 (2.00E-148) | Domain of unknown function (DUF23) |
| CRO_T024619 | AT3G54120 (3.00E-38) | Reticulon family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001246 | TNF signaling pathway NF-kappa B signaling pathway Cytochrome_P450, Cytochrome P450: CYP71B hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase ethylene biosynthesis I (plants) Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) flavonol biosynthesis gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) gibberellin biosynthesis III (early C-13 hydroxylation) leucodelphinidin biosynthesis pinobanksin biosynthesis syringetin biosynthesis vindoline and vinblastine biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001472 | Transcription_related, Transcription factor: DBP flavin biosynthesis I (bacteria and plants) endoplasmic reticulum actin cytoskeleton actin filament depolymerization Transcription_related, Transcription factor: HB Regulation of actin cytoskeleton cell membrane part | details |
| TreatCFM001713 | RNA binding metal ion binding nucleotidyltransferase activity RNA processing vesicle-mediated transport cell part formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001726 | L-phenylalanine biosynthesis II L-tyrosine biosynthesis II Transcription_related, Transcription factor: Whirly hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc MicroRNAs in cancer L-amino acid transport chorismate metabolic process L-alpha-amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: USP aromatic amino acid family biosynthetic process chorismate mutase activity defense response to fungus cellular protein metabolic process L-amino acid transmembrane transporter activity cysteine-type peptidase activity positive regulation of transcription, DNA-templated Biosynthesis of amino acids antiporter activity hydrolase activity, acting on ester bonds | details |
| TreatCFM001754 | glycerol-3-phosphate O-acyltransferase activity methionine adenosyltransferase activity GDP-mannose transmembrane transporter activity maintenance of root meristem identity GDP-mannose transmembrane transport S-adenosylmethionine biosynthetic process endoplasmic reticulum DNA replication factor A complex CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family one-carbon metabolic process Prp19 complex Cul4-RING E3 ubiquitin ligase complex carbohydrate transport precatalytic spliceosome membrane part catalytic step 2 spliceosome cytosol mRNA splicing, via spliceosome | details |
| TreatCFM001821 | mRNA splicing, via spliceosome Spliceosome Transcription_related, Transcription factor: Whirly MicroRNAs in cancer hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc DNA replication factor A complex L-amino acid transport L-alpha-amino acid transmembrane transport Ubiquitin_Proteasome_system, DUB: USP Prp19 complex Cul4-RING E3 ubiquitin ligase complex COPII vesicle coat Proteasome precatalytic spliceosome catalytic step 2 spliceosome defense response to fungus regulation of gene expression RNA secondary structure unwinding ER to Golgi vesicle-mediated transport cellular protein metabolic process positive regulation of transcription, DNA-templated | details |
| TreatCFM001910 | linoleate biosynthesis I (plants) protein kinase regulator activity oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water Ubiquitin_Proteasome_system, E3 adaptor: BTB Fatty acid metabolism regulation of protein kinase activity response to red light Cul3-RING ubiquitin ligase complex membrane part | details |
| TreatCFM002069 | heterochromatin maintenance leaf pavement cell development regulation of mRNA polyadenylation positive regulation of chromatin silencing positive regulation of histone H3-K27 methylation regulation of DNA methylation positive regulation of histone H3-K9 dimethylation Proteasome positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of flower development positive regulation of proteasomal protein catabolic process regulation of leaf development formation of glycosidic bonds, GlycosylTransferases: GTnc cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process vegetative to reproductive phase transition of meristem defense response to fungus TBP-class protein binding proteasome-activating ATPase activity single-organism process chloroplast thylakoid | details |
Expression profiles
 Show details about module gene expression profiling |