TreatCFM001706's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| thiamine diphosphate biosynthesis IV (eukaryotes) | 0.001063594 | plantCyc |
| [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 0.002698776 | GO:0030785 |
| 8-oxo-dGDP phosphatase activity | 0.002698776 | GO:0044715 |
| epoxide hydrolase activity | 0.002698776 | GO:0004301 |
| threonine-type endopeptidase activity | 0.00960374 | GO:0004298 |
| Cell cycle - Caulobacter | 0.012195236 | KEGG pathway |
| Proteasome | 0.012195236 | KEGG pathway |
| chloroplastic endopeptidase Clp complex | 0.012871389 | GO:0009840 |
| proteasome core complex | 0.017689008 | GO:0005839 |
| Transcription_related, Transcription regulator: SET | 0.018573055 | TF family |
| Transcription_related, Transcription factor: HB | 0.019840987 | TF family |
| chloroplast | 0.024834932 | GO:0009507 |
| chloroplast thylakoid | 0.031292983 | GO:0009534 |
| serine-type endopeptidase activity | 0.038599143 | GO:0004252 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000002 | AT1G09130 (2.00E-32) | ATP-dependent caseinolytic (Clp) protease/crotonase family protein |
| CRO_T012193 | AT5G19460 (2.00E-103) | atnudt20|nudix hydrolase homolog 20 |
| CRO_T013751 | - | - |
| CRO_T017182 | AT5G14260 (1.00E-16) | Rubisco methyltransferase family protein |
| CRO_T017954 | AT1G54990 (9.00E-04) | AXR4|AUXIN RESISTANT 4; RGR|REDUCED ROOT GRAVITROPISM; RGR1|REDUCED ROOT GRAVITROPISM 1 |
| CRO_T026659 | AT4G31300 (9.00E-14) | PBA1|N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001485 | photosystem II oxygen evolving complex assembly protein maturation by iron-sulfur cluster transfer single-organism transport epoxide hydrolase activity ferrous iron binding Transcription_related, Transcription factor: bHLH iron-sulfur cluster assembly Photosynthesis single-organism cellular process protein transport protein transporter activity 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding mitochondrial matrix chloroplast part membrane part chloroplast thylakoid photosystem II | details |
| TreatCFM001785 | chloroplast photosystem II oxygen evolving complex assembly regulation of pentose-phosphate shunt 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity epoxide hydrolase activity cell morphogenesis single-organism transport cytoskeleton organization gluconeogenesis glycolysis I (from glucose 6-phosphate) Transcription_related, Transcription factor: bHLH photosystem II oxygen evolving complex chloroplast part extrinsic component of membrane glycolytic process single-organism cellular process protein transport membrane part thylakoid actin binding protein transporter activity Photosynthesis | details |
| TreatCFM001926 | [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity protein kinase activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Transcription_related, Transcription regulator: SET chloroplast | details |
Expression profiles
 Show details about module gene expression profiling |