TreatCFM001926's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 0.004210476 | GO:0030785 |
| protein kinase activity | 0.004210476 | GO:0004672 |
| Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family | 0.009286528 | kinase family |
| Transcription_related, Transcription regulator: SET | 0.009286528 | TF family |
| chloroplast | 0.012314842 | GO:0009507 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004111 | AT5G50860 (3.00E-114) | Protein kinase superfamily protein |
| CRO_T009442 | AT1G65230 (1.00E-93) | Uncharacterized conserved protein (DUF2358) |
| CRO_T017182 | AT5G14260 (1.00E-16) | Rubisco methyltransferase family protein |
| CRO_T018287 | AT2G41760 (2.00E-25) | unknown protein |
| CRO_T020249 | AT2G39190 (7.00E-98) | ATATH8|Protein kinase superfamily protein |
| CRO_T029203 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001439 | Alanine, aspartate and glutamate metabolism nuclear-transcribed mRNA catabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycerolipid metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds large ribosomal subunit rRNA binding nitrogen compound metabolic process glycosyl compound metabolic process ribosomal large subunit assembly cytoplasmic translation rRNA processing beta-glucosidase activity | details |
| TreatCFM001706 | thiamine diphosphate biosynthesis IV (eukaryotes) [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity 8-oxo-dGDP phosphatase activity epoxide hydrolase activity threonine-type endopeptidase activity Cell cycle - Caulobacter Proteasome chloroplastic endopeptidase Clp complex proteasome core complex Transcription_related, Transcription regulator: SET Transcription_related, Transcription factor: HB chloroplast chloroplast thylakoid serine-type endopeptidase activity | details |
| TreatCFM001919 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Transcription_related, Transcription factor: bHLH Phenylpropanoid biosynthesis | details |
| TreatCFM001927 | Transcription_related, Transcription regulator: Rcd1-like protein targeting to chloroplast negative regulation of translation CCR4-NOT core complex hydrolase activity, acting on acid anhydrides cytoplasmic mRNA processing body Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family RNA degradation zinc ion binding | details |
| TreatCFM002045 | Transcription_related, Transcription regulator: Rcd1-like protein kinase activity sucrose-phosphate synthase activity sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose synthase activity CCR4-NOT core complex negative regulation of translation sucrose metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family cytoplasmic mRNA processing body RNA degradation Starch and sucrose metabolism | details |
| TreatCFM002046 | protein kinase activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Phenylpropanoid biosynthesis | details |
| TreatCFM002056 | formation of glycosidic bonds, GlycosylTransferases: GTnc glycerol degradation I xylulokinase activity antioxidant activity sucrose-phosphate synthase activity sucrose synthase activity sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose metabolic process carbohydrate phosphorylation Starch and sucrose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |