TreatCFM001485's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| photosystem II oxygen evolving complex assembly | 0.00608174 | GO:0010270 |
| protein maturation by iron-sulfur cluster transfer | 0.00911695 | GO:0097428 |
| single-organism transport | 0.00911695 | GO:0044765 |
| epoxide hydrolase activity | 0.012157011 | GO:0004301 |
| ferrous iron binding | 0.012157011 | GO:0008198 |
| Transcription_related, Transcription factor: bHLH | 0.016638898 | TF family |
| iron-sulfur cluster assembly | 0.018209667 | GO:0016226 |
| Photosynthesis | 0.018880093 | KEGG pathway |
| single-organism cellular process | 0.025232985 | GO:0044763 |
| protein transport | 0.025232985 | GO:0015031 |
| protein transporter activity | 0.030882437 | GO:0008565 |
| 2 iron, 2 sulfur cluster binding | 0.030882437 | GO:0051537 |
| 4 iron, 4 sulfur cluster binding | 0.030882437 | GO:0051539 |
| mitochondrial matrix | 0.036737458 | GO:0005759 |
| chloroplast part | 0.036737458 | GO:0044434 |
| membrane part | 0.036737458 | GO:0044425 |
| chloroplast | 0.036737458 | GO:0009507 |
| thylakoid | 0.036737458 | GO:0009579 |
| photosystem II | 0.036737458 | GO:0009523 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006108 | AT1G02910 (6.00E-154) | LPA1|LOW PSII ACCUMULATION1 |
| CRO_T011540 | AT2G20180 (3.00E-23) | PIF1|PHY-INTERACTING FACTOR 1; PIL5|phytochrome interacting factor 3-like 5 |
| CRO_T011715 | AT5G52440 (4.00E-44) | HCF106|HIGH CHLOROPHYLL FLUORESCENCE 106 |
| CRO_T017954 | AT1G54990 (9.00E-04) | AXR4|AUXIN RESISTANT 4; RGR|REDUCED ROOT GRAVITROPISM; RGR1|REDUCED ROOT GRAVITROPISM 1 |
| CRO_T019043 | AT3G55330 (3.00E-37) | PPL1|PsbP-like protein 1 |
| CRO_T025027 | AT5G35450 (3.00E-44) | Disease resistance protein (CC-NBS-LRR class) family |
| CRO_T029871 | AT5G03900 (2.00E-24) | Iron-sulphur cluster biosynthesis family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001308 | regulation of fatty acid beta-oxidation regulation of photorespiration protein import into chloroplast thylakoid membrane peptidyl-pyrromethane cofactor linkage tetrapyrrole biosynthetic process glyoxylate cycle chloroplast envelope signal recognition particle, chloroplast targeting glyoxysome chloroplast thylakoid membrane hydroxymethylbilane synthase activity L-ascorbate peroxidase activity L-malate dehydrogenase activity ascorbate glutathione cycle L-ascorbate degradation V tetrapyrrole biosynthesis I (from glutamate) TCA cycle II (plants and fungi) chloroplast thylakoid lumen malate metabolic process chloroplast photosystem II extrinsic component of membrane photosystem II oxygen evolving complex gluconeogenesis I response to light stimulus tricarboxylic acid cycle identical protein binding Ascorbate and aldarate metabolism Porphyrin and chlorophyll metabolism Photosynthesis | details |
| TreatCFM001607 | mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity sulfiredoxin activity nuclear speck MIS complex protein-lysine N-methyltransferase activity single-organism transport gametophyte development mRNA methylation peptidyl-lysine monomethylation chloroplast part chloroplast membrane part thylakoid cellular protein metabolic process protein transport single-organism cellular process protein transporter activity | details |
| TreatCFM001706 | thiamine diphosphate biosynthesis IV (eukaryotes) [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity 8-oxo-dGDP phosphatase activity epoxide hydrolase activity threonine-type endopeptidase activity Cell cycle - Caulobacter Proteasome chloroplastic endopeptidase Clp complex proteasome core complex Transcription_related, Transcription regulator: SET Transcription_related, Transcription factor: HB chloroplast chloroplast thylakoid serine-type endopeptidase activity | details |
| TreatCFM001785 | chloroplast photosystem II oxygen evolving complex assembly regulation of pentose-phosphate shunt 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity epoxide hydrolase activity cell morphogenesis single-organism transport cytoskeleton organization gluconeogenesis glycolysis I (from glucose 6-phosphate) Transcription_related, Transcription factor: bHLH photosystem II oxygen evolving complex chloroplast part extrinsic component of membrane glycolytic process single-organism cellular process protein transport membrane part thylakoid actin binding protein transporter activity Photosynthesis | details |
| TreatCFM001919 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Transcription_related, Transcription factor: bHLH Phenylpropanoid biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |