TreatCFM001785's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chloroplast | 0.004113404 | GO:0009507 |
| photosystem II oxygen evolving complex assembly | 0.006058919 | GO:0010270 |
| regulation of pentose-phosphate shunt | 0.006058919 | GO:0043456 |
| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity | 0.006080662 | GO:0046538 |
| epoxide hydrolase activity | 0.006080662 | GO:0004301 |
| cell morphogenesis | 0.010091039 | GO:0000902 |
| single-organism transport | 0.010091039 | GO:0044765 |
| cytoskeleton organization | 0.010091039 | GO:0007010 |
| gluconeogenesis | 0.010091039 | GO:0006094 |
| glycolysis I (from glucose 6-phosphate) | 0.010914226 | plantCyc |
| Transcription_related, Transcription factor: bHLH | 0.016638898 | TF family |
| photosystem II oxygen evolving complex | 0.031539533 | GO:0009654 |
| chloroplast part | 0.031539533 | GO:0044434 |
| extrinsic component of membrane | 0.031539533 | GO:0019898 |
| glycolytic process | 0.031926499 | GO:0006096 |
| single-organism cellular process | 0.033517738 | GO:0044763 |
| protein transport | 0.033517738 | GO:0015031 |
| membrane part | 0.035713132 | GO:0044425 |
| thylakoid | 0.036737458 | GO:0009579 |
| actin binding | 0.037387873 | GO:0003779 |
| protein transporter activity | 0.038603046 | GO:0008565 |
| Photosynthesis | 0.045148813 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006108 | AT1G02910 (6.00E-154) | LPA1|LOW PSII ACCUMULATION1 |
| CRO_T010364 | AT2G42230 (0) | C-CAP/cofactor C-like domain-containing protein |
| CRO_T011540 | AT2G20180 (3.00E-23) | PIF1|PHY-INTERACTING FACTOR 1; PIL5|phytochrome interacting factor 3-like 5 |
| CRO_T011715 | AT5G52440 (4.00E-44) | HCF106|HIGH CHLOROPHYLL FLUORESCENCE 106 |
| CRO_T012151 | AT1G22170 (2.00E-130) | Phosphoglycerate mutase family protein |
| CRO_T017954 | AT1G54990 (9.00E-04) | AXR4|AUXIN RESISTANT 4; RGR|REDUCED ROOT GRAVITROPISM; RGR1|REDUCED ROOT GRAVITROPISM 1 |
| CRO_T026027 | AT2G43310 (2.00E-34) | Ribosomal L18p/L5e family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001308 | regulation of fatty acid beta-oxidation regulation of photorespiration protein import into chloroplast thylakoid membrane peptidyl-pyrromethane cofactor linkage tetrapyrrole biosynthetic process glyoxylate cycle chloroplast envelope signal recognition particle, chloroplast targeting glyoxysome chloroplast thylakoid membrane hydroxymethylbilane synthase activity L-ascorbate peroxidase activity L-malate dehydrogenase activity ascorbate glutathione cycle L-ascorbate degradation V tetrapyrrole biosynthesis I (from glutamate) TCA cycle II (plants and fungi) chloroplast thylakoid lumen malate metabolic process chloroplast photosystem II extrinsic component of membrane photosystem II oxygen evolving complex gluconeogenesis I response to light stimulus tricarboxylic acid cycle identical protein binding Ascorbate and aldarate metabolism Porphyrin and chlorophyll metabolism Photosynthesis | details |
| TreatCFM001485 | photosystem II oxygen evolving complex assembly protein maturation by iron-sulfur cluster transfer single-organism transport epoxide hydrolase activity ferrous iron binding Transcription_related, Transcription factor: bHLH iron-sulfur cluster assembly Photosynthesis single-organism cellular process protein transport protein transporter activity 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding mitochondrial matrix chloroplast part membrane part chloroplast thylakoid photosystem II | details |
| TreatCFM001607 | mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity sulfiredoxin activity nuclear speck MIS complex protein-lysine N-methyltransferase activity single-organism transport gametophyte development mRNA methylation peptidyl-lysine monomethylation chloroplast part chloroplast membrane part thylakoid cellular protein metabolic process protein transport single-organism cellular process protein transporter activity | details |
| TreatCFM001686 | UDP-glucose transmembrane transporter activity dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate beta-glucosyltransferase activity UDP-galactose transmembrane transporter activity dolichyl-phosphate-mannose-protein mannosyltransferase activity lateral root development UDP-glucose transport heme biosynthetic process photosystem II stabilization root hair cell development UDP-galactose transmembrane transport dolichol metabolic process protein O-linked mannosylation cell morphogenesis cytoskeleton organization GPI anchor biosynthetic process protein N-linked glycosylation Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) protein N-glycosylation (eukaryotic, high mannose) formation of glycosidic bonds, GlycosylTransferases: GTnc N-Glycan biosynthesis Porphyrin and chlorophyll metabolism actin binding chloroplast part | details |
| TreatCFM001706 | thiamine diphosphate biosynthesis IV (eukaryotes) [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity 8-oxo-dGDP phosphatase activity epoxide hydrolase activity threonine-type endopeptidase activity Cell cycle - Caulobacter Proteasome chloroplastic endopeptidase Clp complex proteasome core complex Transcription_related, Transcription regulator: SET Transcription_related, Transcription factor: HB chloroplast chloroplast thylakoid serine-type endopeptidase activity | details |
| TreatCFM001919 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Transcription_related, Transcription factor: bHLH Phenylpropanoid biosynthesis | details |
| TreatCFM001970 | UDP-galactose transmembrane transporter activity UDP-glucose transmembrane transporter activity 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity UDP-glucose transport root hair cell development lateral root development regulation of pentose-phosphate shunt UDP-galactose transmembrane transport gluconeogenesis glycolysis I (from glucose 6-phosphate) glycolytic process Transcription_related, Transcription factor: WRKY Carbon metabolism embryo development ending in seed dormancy methyltransferase activity | details |
Expression profiles
 Show details about module gene expression profiling |