TreatCFM001281's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: BBR-BPC | 0.004784688 | TF family |
| pyrimidine nucleotide metabolic process | 0.006072336 | GO:0006220 |
| dCMP deaminase activity | 0.007818687 | GO:0004132 |
| polysaccharide biosynthetic process | 0.010620309 | GO:0000271 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.014303265 | cazy family |
| homogalacturonan biosynthesis | 0.017510711 | plantCyc |
| Phenylpropanoid biosynthesis | 0.026915366 | KEGG pathway |
| plant-type cell wall organization | 0.037291506 | GO:0009664 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000146 | AT2G23755 (4.00E-31) | unknown protein |
| CRO_T008115 | AT3G58790 (2.00E-21) | GAUT15|galacturonosyltransferase 15 |
| CRO_T009087 | AT1G10540 (0) | NAT8|nucleobase-ascorbate transporter 8 |
| CRO_T010334 | AT1G68120 (6.00E-33) | BPC3|basic pentacysteine 3 |
| CRO_T014495 | AT3G48540 (5.00E-61) | Cytidine/deoxycytidylate deaminase family protein |
| CRO_T017853 | AT4G26470 (7.00E-37) | Calcium-binding EF-hand family protein |
| CRO_T030435 | AT1G20190 (1.00E-108) | ATEXPA11|expansin 11; EXP11|EXPANSIN 11 |
| CRO_T030442 | AT2G21890 (5.00E-111) | CAD3|cinnamyl alcohol dehydrogenase homolog 3 |
| CRO_T032698 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000063 | oleate biosynthesis I (plants) pyrimidine nucleotide metabolic process acyl-[acyl-carrier-protein] desaturase activity dCMP deaminase activity rRNA primary transcript binding nuclear matrix clathrin adaptor complex Mpp10 complex snoRNA binding zinc ion binding protein transporter activity Endocytosis Fatty acid metabolism Pyrimidine metabolism Ribosome biogenesis in eukaryotes small-subunit processome | details |
| TreatCFM000873 | phosphatidylcholine metabolic process calcium ion binding phospholipase D activity N-acylphosphatidylethanolamine-specific phospholipase D activity lipid catabolic process choline biosynthesis III phosphatidate metabolism, as a signaling molecule phospholipases Glycerophospholipid metabolism Plant-pathogen interaction | details |
| TreatCFM001138 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: BBR-BPC mevalonate pathway I calcium:sodium antiporter activity signaling receptor activity acetyl-CoA C-acetyltransferase activity protein histidine kinase activity calcium ion homeostasis sodium ion transmembrane transport phosphorelay signal transduction system membrane part | details |
| TreatCFM001235 | Transcription_related, Transcription factor: BBR-BPC Transcription_related, Transcription factor: GRF baicalein degradation (hydrogen peroxide detoxification) 2-oxoisovalerate decarboxylation to isobutanoyl-CoA Propanoate metabolism oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor Transcription_related, Transcription factor: HB | details |
| TreatCFM001341 | salicylate glucosides biosynthesis II salvigenin biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-Dof quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis Starch and sucrose metabolism sucrose metabolic process aromatic compound biosynthetic process sucrose synthase activity O-methyltransferase activity spindle phragmoplast quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity S-adenosylmethionine-dependent methyltransferase activity | details |
| TreatCFM001749 | uracil degradation I (reductive) homogalacturonan biosynthesis Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family beta-ureidopropionase activity sphingomyelin phosphodiesterase activity uracil catabolic process detection of brassinosteroid stimulus root hair cell differentiation positive regulation of protein export from nucleus polysaccharide biosynthetic process Pyrimidine metabolism Ras signaling pathway formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination brassinosteroid mediated signaling pathway translation release factor activity, codon specific multidimensional cell growth leaf morphogenesis ribosome binding protein autophosphorylation response to auxin small GTPase mediated signal transduction | details |
| TreatCFM001762 | salvigenin biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc sucrose metabolic process aromatic compound biosynthetic process sucrose synthase activity O-methyltransferase activity Starch and sucrose metabolism S-adenosylmethionine-dependent methyltransferase activity spindle phragmoplast | details |
| TreatCFM002020 | sphingomyelin phosphodiesterase activity acyl-[acyl-carrier-protein] desaturase activity dCMP deaminase activity pyrimidine nucleotide metabolic process hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 external side of plasma membrane homogalacturonan degradation oleate biosynthesis I (plants) Pyrimidine metabolism Ras signaling pathway Fatty acid metabolism aspartyl esterase activity pectinesterase inhibitor activity pectinesterase activity small GTPase mediated signal transduction pectin catabolic process cell wall modification response to salt stress multidimensional cell growth negative regulation of catalytic activity fatty acid biosynthetic process | details |
| TreatCFM002062 | Transcription_related, Transcription factor: BBR-BPC | details |
Expression profiles
 Show details about module gene expression profiling |