TreatCFM001763's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Base excision repair | 0.004955011 | KEGG pathway |
| histone-threonine phosphorylation | 0.00706193 | GO:0035405 |
| stem cell division | 0.00706193 | GO:0017145 |
| regulation of post-embryonic root development | 0.00706193 | GO:2000069 |
| virus induced gene silencing | 0.00706193 | GO:0009616 |
| regulation of ethylene biosynthetic process | 0.007532057 | GO:0010364 |
| posttranscriptional gene silencing by RNA | 0.007845197 | GO:0035194 |
| protein binding, bridging | 0.008992348 | GO:0030674 |
| oxidized purine nucleobase lesion DNA N-glycosylase activity | 0.008992348 | GO:0008534 |
| histone threonine kinase activity | 0.008992348 | GO:0035184 |
| nucleotide-excision repair | 0.013442949 | GO:0006289 |
| cellular response to phosphate starvation | 0.014112593 | GO:0016036 |
| Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box | 0.015505016 | ubs family |
| base-excision repair | 0.01880345 | GO:0006284 |
| cell differentiation | 0.01880345 | GO:0030154 |
| damaged DNA binding | 0.026934026 | GO:0003684 |
| Transcription_related, Transcription factor: C2H2 | 0.036363302 | TF family |
| Transcription_related, Transcription factor: GRAS | 0.036363302 | TF family |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.036363302 | ubs family |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.048558517 | GO:0043161 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000218 | AT1G52500 (7.00E-88) | ATFPG-1|A. THALIANA FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1; ATFPG-2|FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 2; ATMMH-1|MUTM homolog-1; FPG-1|FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1; MMH|MUTM homolog |
| CRO_T000340 | AT1G14920 (4.00E-26) | GAI|GIBBERELLIC ACID INSENSITIVE; RGA2|RESTORATION ON GROWTH ON AMMONIA 2 |
| CRO_T000406 | AT1G05460 (0) | SDE3|SILENCING DEFECTIVE |
| CRO_T009203 | AT1G24625 (8.00E-27) | ZFP7|zinc finger protein 7 |
| CRO_T015709 | AT1G04780 (0) | Ankyrin repeat family protein |
| CRO_T016828 | AT1G09450 (4.00E-138) | Haspin|Haspin-related gene |
| CRO_T025937 | AT3G51770 (0) | ATEOL1|ARABIDOPSIS ETHYLENE OVERPRODUCER 1; ETO1|ETHYLENE OVERPRODUCER 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001288 | Protein_kinases_phosphatases, PPC:1.3.7: Receptor like protein kinase/Receptor lectin kinase like protein Progesterone-mediated oocyte maturation virus induced gene silencing posttranscriptional gene silencing by RNA cytoskeleton scopoletin biosynthesis chlorogenic acid biosynthesis I Phenylpropanoid biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis defense response to fungus plant-type cell wall organization hydrogen peroxide catabolic process O-methyltransferase activity | details |
| TreatCFM001291 | Base excision repair histone-threonine phosphorylation histone threonine kinase activity DNA-(apurinic or apyrimidinic site) lyase activity hydrolase activity, hydrolyzing N-glycosyl compounds cell differentiation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: GRAS | details |
| TreatCFM001604 | steroid dehydrogenase activity NADP+ binding alcohol dehydrogenase (NADP+) activity detoxification of reactive carbonyls in chloroplasts virus induced gene silencing response to toxic substance response to absence of light response to far red light response to red light posttranscriptional gene silencing by RNA response to cold nuclear body protein homodimerization activity S-adenosylmethionine-dependent methyltransferase activity response to water deprivation response to salt stress | details |
| TreatCFM001764 | histone threonine kinase activity stem cell division histone-threonine phosphorylation regulation of post-embryonic root development virus induced gene silencing regulation of ethylene biosynthetic process posttranscriptional gene silencing by RNA protein binding, bridging adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box cellular response to phosphate starvation protein phosphorylation Ubiquitin_Proteasome_system, E3 adaptor: BTB response to stress proteasome-mediated ubiquitin-dependent protein catabolic process intracellular signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |