TreatCFM001604's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| steroid dehydrogenase activity | 0.001349587 | GO:0016229 |
| NADP+ binding | 0.001349587 | GO:0070401 |
| alcohol dehydrogenase (NADP+) activity | 0.001349587 | GO:0008106 |
| detoxification of reactive carbonyls in chloroplasts | 0.005485094 | plantCyc |
| virus induced gene silencing | 0.006602576 | GO:0009616 |
| response to toxic substance | 0.006602576 | GO:0009636 |
| response to absence of light | 0.006602576 | GO:0009646 |
| response to far red light | 0.007700729 | GO:0010218 |
| response to red light | 0.007700729 | GO:0010114 |
| posttranscriptional gene silencing by RNA | 0.007700729 | GO:0035194 |
| response to cold | 0.016959245 | GO:0009409 |
| nuclear body | 0.018239289 | GO:0016604 |
| protein homodimerization activity | 0.025392507 | GO:0042803 |
| S-adenosylmethionine-dependent methyltransferase activity | 0.025392507 | GO:0008757 |
| response to water deprivation | 0.031281237 | GO:0009414 |
| response to salt stress | 0.032910594 | GO:0009651 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000406 | AT1G05460 (0) | SDE3|SILENCING DEFECTIVE |
| CRO_T004484 | AT5G04060 (3.00E-75) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T005441 | AT4G04670 (0) | Met-10+ like family protein / kelch repeat-containing protein |
| CRO_T017138 | - | - |
| CRO_T020905 | AT4G08690 (9.00E-19) | Sec14p-like phosphatidylinositol transfer family protein |
| CRO_T021902 | AT2G21260 (6.00E-44) | NAD(P)-linked oxidoreductase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000039 | details | |
| TreatCFM000360 | radial pattern formation bundle sheath cell fate specification regulation of cellular metabolic process maintenance of protein location in nucleus asymmetric cell division gravitropism glyoxylate cycle TCA cycle II (plants and fungi) Transcription_related, Transcription factor: GRAS gluconeogenesis I malate metabolic process leaf development tricarboxylic acid cycle L-malate dehydrogenase activity | details |
| TreatCFM001288 | Protein_kinases_phosphatases, PPC:1.3.7: Receptor like protein kinase/Receptor lectin kinase like protein Progesterone-mediated oocyte maturation virus induced gene silencing posttranscriptional gene silencing by RNA cytoskeleton scopoletin biosynthesis chlorogenic acid biosynthesis I Phenylpropanoid biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis defense response to fungus plant-type cell wall organization hydrogen peroxide catabolic process O-methyltransferase activity | details |
| TreatCFM001289 | histone methyltransferase activity (H3-K9 specific) methyl-CpNpN binding steroid dehydrogenase activity methyl-CpNpG binding alcohol dehydrogenase (NADP+) activity NADP+ binding double-stranded methylated DNA binding oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen methyl-CpG binding monooxygenase activity endopeptidase activity enzyme regulator activity Cytochrome_P450, Cytochrome P450: CYP714A response to toxic substance maintenance of DNA methylation histone H3-K9 methylation response to absence of light regulation of protein catabolic process response to red light intracellular transport response to far red light positive regulation of G2/M transition of mitotic cell cycle cullin deneddylation proteasome storage granule Sec61 translocon complex | details |
| TreatCFM001763 | Base excision repair histone-threonine phosphorylation stem cell division regulation of post-embryonic root development virus induced gene silencing regulation of ethylene biosynthetic process posttranscriptional gene silencing by RNA protein binding, bridging oxidized purine nucleobase lesion DNA N-glycosylase activity histone threonine kinase activity nucleotide-excision repair cellular response to phosphate starvation Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box base-excision repair cell differentiation damaged DNA binding Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: GRAS Ubiquitin_Proteasome_system, E3 adaptor: BTB proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM001764 | histone threonine kinase activity stem cell division histone-threonine phosphorylation regulation of post-embryonic root development virus induced gene silencing regulation of ethylene biosynthetic process posttranscriptional gene silencing by RNA protein binding, bridging adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box cellular response to phosphate starvation protein phosphorylation Ubiquitin_Proteasome_system, E3 adaptor: BTB response to stress proteasome-mediated ubiquitin-dependent protein catabolic process intracellular signal transduction | details |
| TreatCFM001779 | developmental process involved in reproduction detection of nutrient organ senescence vegetative phase change regulation of cellular metabolic process L-malate dehydrogenase activity protein tyrosine kinase activity glyoxylate cycle TCA cycle II (plants and fungi) sugar mediated signaling pathway Apelin signaling pathway primary root development gluconeogenesis I malate metabolic process tricarboxylic acid cycle zinc ion binding peptidyl-tyrosine phosphorylation abscisic acid-activated signaling pathway | details |
Expression profiles
 Show details about module gene expression profiling |