TreatCFM001764's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| histone threonine kinase activity | 0.004048762 | GO:0035184 |
| stem cell division | 0.004417374 | GO:0017145 |
| histone-threonine phosphorylation | 0.004417374 | GO:0035405 |
| regulation of post-embryonic root development | 0.004417374 | GO:2000069 |
| virus induced gene silencing | 0.004417374 | GO:0009616 |
| regulation of ethylene biosynthetic process | 0.004711517 | GO:0010364 |
| posttranscriptional gene silencing by RNA | 0.004907468 | GO:0035194 |
| protein binding, bridging | 0.006071349 | GO:0030674 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.007079055 | cazy family |
| Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI | 0.007079055 | kinase family |
| Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX | 0.007079055 | kinase family |
| Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box | 0.007079055 | ubs family |
| cellular response to phosphate starvation | 0.010090142 | GO:0016036 |
| protein phosphorylation | 0.013308036 | GO:0006468 |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.023385865 | ubs family |
| response to stress | 0.033438366 | GO:0006950 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.033438366 | GO:0043161 |
| intracellular signal transduction | 0.047352287 | GO:0035556 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000406 | AT1G05460 (0) | SDE3|SILENCING DEFECTIVE |
| CRO_T012465 | AT1G16760 (0) | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain |
| CRO_T016828 | AT1G09450 (4.00E-138) | Haspin|Haspin-related gene |
| CRO_T020529 | - | - |
| CRO_T024581 | AT3G05140 (1.00E-122) | RBK2|ROP binding protein kinases 2 |
| CRO_T025937 | AT3G51770 (0) | ATEOL1|ARABIDOPSIS ETHYLENE OVERPRODUCER 1; ETO1|ETHYLENE OVERPRODUCER 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001288 | Protein_kinases_phosphatases, PPC:1.3.7: Receptor like protein kinase/Receptor lectin kinase like protein Progesterone-mediated oocyte maturation virus induced gene silencing posttranscriptional gene silencing by RNA cytoskeleton scopoletin biosynthesis chlorogenic acid biosynthesis I Phenylpropanoid biosynthesis phenylpropanoids methylation (ice plant) suberin monomers biosynthesis defense response to fungus plant-type cell wall organization hydrogen peroxide catabolic process O-methyltransferase activity | details |
| TreatCFM001291 | Base excision repair histone-threonine phosphorylation histone threonine kinase activity DNA-(apurinic or apyrimidinic site) lyase activity hydrolase activity, hydrolyzing N-glycosyl compounds cell differentiation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: GRAS | details |
| TreatCFM001604 | steroid dehydrogenase activity NADP+ binding alcohol dehydrogenase (NADP+) activity detoxification of reactive carbonyls in chloroplasts virus induced gene silencing response to toxic substance response to absence of light response to far red light response to red light posttranscriptional gene silencing by RNA response to cold nuclear body protein homodimerization activity S-adenosylmethionine-dependent methyltransferase activity response to water deprivation response to salt stress | details |
| TreatCFM001763 | Base excision repair histone-threonine phosphorylation stem cell division regulation of post-embryonic root development virus induced gene silencing regulation of ethylene biosynthetic process posttranscriptional gene silencing by RNA protein binding, bridging oxidized purine nucleobase lesion DNA N-glycosylase activity histone threonine kinase activity nucleotide-excision repair cellular response to phosphate starvation Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box base-excision repair cell differentiation damaged DNA binding Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: GRAS Ubiquitin_Proteasome_system, E3 adaptor: BTB proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM002084 | xylem development determination of bilateral symmetry radial pattern formation meristem initiation polarity specification of adaxial/abaxial axis guanosine nucleotides degradation I guanosine nucleotides degradation II pyrimidine salvage pathway xylem and phloem pattern formation U6 snRNP Lsm1-7-Pat1 complex adenosine nucleotides degradation I Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX cell differentiation 5'-nucleotidase activity U4/U6 x U5 tri-snRNP complex precatalytic spliceosome cytoplasmic mRNA processing body cytosol catalytic step 2 spliceosome viral nucleocapsid transcription regulatory region DNA binding mRNA splicing, via spliceosome Transcription_related, Transcription factor: HB response to stress Proteasome lipid binding dephosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |