TreatCFM001774's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Glucagon signaling pathway | 0.002659181 | KEGG pathway |
| [2Fe-2S] cluster assembly | 0.005888091 | GO:0044571 |
| protein export from nucleus | 0.005888091 | GO:0006611 |
| cellular iron ion homeostasis | 0.005888091 | GO:0006879 |
| alkane biosynthetic process | 0.005888091 | GO:0043447 |
| RNA polymerase II transcriptional preinitiation complex assembly | 0.005888091 | GO:0051123 |
| protein maturation by iron-sulfur cluster transfer | 0.005888091 | GO:0097428 |
| cuticle hydrocarbon biosynthetic process | 0.005888091 | GO:0006723 |
| histone acetyltransferase binding | 0.005889396 | GO:0035035 |
| transcription factor binding | 0.005889396 | GO:0008134 |
| nuclear export signal receptor activity | 0.005889396 | GO:0005049 |
| iron-sulfur transferase activity | 0.005889396 | GO:0036455 |
| ferrous iron binding | 0.00942025 | GO:0008198 |
| Basal transcription factors | 0.010873683 | KEGG pathway |
| transcription factor TFIID complex | 0.013029989 | GO:0005669 |
| transcription coactivator activity | 0.014289088 | GO:0003713 |
| transcription regulatory region DNA binding | 0.014289088 | GO:0044212 |
| protein import into nucleus | 0.016174314 | GO:0006606 |
| Ran GTPase binding | 0.016174314 | GO:0008536 |
| nuclear envelope | 0.019530547 | GO:0005635 |
| 2 iron, 2 sulfur cluster binding | 0.022850809 | GO:0051537 |
| phosphoprotein phosphatase activity | 0.024020112 | GO:0004721 |
| 4 iron, 4 sulfur cluster binding | 0.024020112 | GO:0051539 |
| regulation of transcription from RNA polymerase II promoter | 0.031308169 | GO:0006357 |
| mitochondrial matrix | 0.033792973 | GO:0005759 |
| embryo development ending in seed dormancy | 0.046823697 | GO:0009793 |
| protein dephosphorylation | 0.046823697 | GO:0006470 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004233 | AT2G43250 (2.00E-140) | unknown protein |
| CRO_T008075 | AT2G42810 (1.00E-43) | AtPP5|protein phosphatase 5; PAPP5|Phytochrome-Associated Protein Phosphatase 5; PP5.2|protein phosphatase 5.2 |
| CRO_T012406 | AT1G55300 (2.00E-56) | TAF7|TBP-associated factor 7 |
| CRO_T018153 | AT2G31660 (5.00E-09) | EMA1|enhanced miRNA activity 1; SAD2|SUPER SENSITIVE TO ABA AND DROUGHT2; URM9|UNARMED 9 |
| CRO_T027064 | AT3G27670 (3.00E-35) | RST1|RESURRECTION1 |
| CRO_T030691 | AT4G22220 (3.00E-64) | ATISU1; ISU1|SufE/NifU family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001646 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay regulation of alternative mRNA splicing, via spliceosome cellular response to nitrogen levels response to sucrose exon-exon junction complex nuclear body Apelin signaling pathway mRNA binding RNA processing Spliceosome | details |
| TreatCFM001654 | protein export from nucleus nuclear export signal receptor activity protein import into nucleus Ran GTPase binding nuclear envelope | details |
| TreatCFM001715 | γ-glutamyl cycle nuclear export signal receptor activity glucan 1,3-alpha-glucosidase activity protein export from nucleus protein import into nucleus ribosomal large subunit assembly Ran GTPase binding N-Glycan biosynthesis | details |
| TreatCFM001983 | adenosine ribonucleotides de novo biosynthesis protein export from nucleus mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) nuclear export signal receptor activity protein import into nucleus peptidyl-tyrosine dephosphorylation nuclear envelope proton-transporting ATPase activity, rotational mechanism proton-transporting ATP synthase activity, rotational mechanism protein tyrosine phosphatase activity Ran GTPase binding ATP synthesis coupled proton transport formation of glycosidic bonds, GlycosylTransferases: GTnc Oxidative phosphorylation | details |
| TreatCFM002015 | Glucagon signaling pathway mucilage biosynthetic process involved in seed coat development positive regulation of kinase activity maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular response to stress regulation of translation plasmodesma PeBoW complex maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) regulation of protein kinase activity vesicle docking involved in exocytosis ribonucleoprotein complex binding protein kinase regulator activity Ubiquitin_Proteasome_system, E2: UBC nucleoplasm preribosome, large subunit precursor exocyst protein kinase binding ribosome binding signal transducer activity nucleotidyltransferase activity phosphoprotein phosphatase activity protein transport DNA replication | details |
| TreatCFM002017 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway protein export from nucleus response to sucrose protein maturation by iron-sulfur cluster transfer cuticle hydrocarbon biosynthetic process cellular iron ion homeostasis cellular response to nitrogen levels [2Fe-2S] cluster assembly aspartate family amino acid biosynthetic process phosphorylation alkane biosynthetic process iron-sulfur transferase activity nuclear export signal receptor activity aspartate kinase activity ferrous iron binding homoserine dehydrogenase activity Apelin signaling pathway protein import into nucleus cellular amino acid biosynthetic process Ran GTPase binding 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding amino acid binding phosphoprotein phosphatase activity NADP binding Biosynthesis of amino acids nuclear envelope | details |
| TreatCFM002018 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway cellular iron ion homeostasis cellular response to nitrogen levels response to sucrose [2Fe-2S] cluster assembly protein maturation by iron-sulfur cluster transfer iron-sulfur transferase activity Apelin signaling pathway core mediator complex mediator complex mitochondrial matrix ferrous iron binding ribosomal large subunit assembly RNA polymerase II transcription cofactor activity cytosolic large ribosomal subunit regulation of transcription from RNA polymerase II promoter 2 iron, 2 sulfur cluster binding phosphoprotein phosphatase activity 4 iron, 4 sulfur cluster binding | details |
| TreatCFM002019 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway cuticle hydrocarbon biosynthetic process protein maturation by iron-sulfur cluster transfer cellular iron ion homeostasis cellular response to nitrogen levels [2Fe-2S] cluster assembly response to sucrose alkane biosynthetic process iron-sulfur transferase activity Apelin signaling pathway mitochondrial matrix ferrous iron binding 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding phosphoprotein phosphatase activity | details |
| TreatCFM002027 | γ-glutamyl cycle glucan 1,3-alpha-glucosidase activity alkane biosynthetic process cuticle hydrocarbon biosynthetic process N-Glycan biosynthesis cell periphery carbohydrate binding cytoplasmic part single-organism process | details |
Expression profiles
 Show details about module gene expression profiling |