TreatCFM001654's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein export from nucleus | 0.004875166 | GO:0006611 |
| nuclear export signal receptor activity | 0.010424761 | GO:0005049 |
| protein import into nucleus | 0.010711901 | GO:0006606 |
| Ran GTPase binding | 0.028629991 | GO:0008536 |
| nuclear envelope | 0.030336564 | GO:0005635 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000256 | - | - |
| CRO_T008067 | AT1G68930 (0) | pentatricopeptide (PPR) repeat-containing protein |
| CRO_T018153 | AT2G31660 (5.00E-09) | EMA1|enhanced miRNA activity 1; SAD2|SUPER SENSITIVE TO ABA AND DROUGHT2; URM9|UNARMED 9 |
| CRO_T023742 | - | - |
| CRO_T031201 | AT3G26360 (3.00E-22) | Ribosomal protein S21 family protein |
| CRO_T033239 | AT3G52380 (6.00E-20) | CP33|chloroplast RNA-binding protein 33; PDE322|PIGMENT DEFECTIVE 322 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000687 | bisbenzylisoquinoline alkaloid biosynthesis magnoflorine biosynthesis nuclear outer membrane-endoplasmic reticulum membrane network AP-3 adaptor complex detoxification of copper ion copper ion export hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TreatCFM001051 | 3-deoxy-7-phosphoheptulonate synthase activity UMP kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc nucleotide phosphorylation pyrimidine nucleotide biosynthetic process aromatic amino acid family biosynthetic process RNA metabolic process 3-dehydroquinate biosynthesis I UTP and CTP de novo biosynthesis xylan biosynthesis cellulose biosynthesis pyrimidine ribonucleotides interconversion Pyrimidine metabolism Biosynthesis of amino acids | details |
| TreatCFM001343 | formation of glycosidic bonds, GlycosylTransferases: GTnc aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xylogalacturonan biosynthesis intracellular organelle part | details |
| TreatCFM001630 | details | |
| TreatCFM001715 | γ-glutamyl cycle nuclear export signal receptor activity glucan 1,3-alpha-glucosidase activity protein export from nucleus protein import into nucleus ribosomal large subunit assembly Ran GTPase binding N-Glycan biosynthesis | details |
| TreatCFM001747 | Ubiquitin_Proteasome_system, E3: RING peptidyl-proline hydroxylation to 4-hydroxy-L-proline Arginine and proline metabolism nucleic acid binding procollagen-proline 4-dioxygenase activity RNA secondary structure unwinding L-ascorbic acid binding membrane endoplasmic reticulum membrane | details |
| TreatCFM001774 | Glucagon signaling pathway [2Fe-2S] cluster assembly protein export from nucleus cellular iron ion homeostasis alkane biosynthetic process RNA polymerase II transcriptional preinitiation complex assembly protein maturation by iron-sulfur cluster transfer cuticle hydrocarbon biosynthetic process histone acetyltransferase binding transcription factor binding nuclear export signal receptor activity iron-sulfur transferase activity ferrous iron binding Basal transcription factors transcription factor TFIID complex transcription coactivator activity transcription regulatory region DNA binding protein import into nucleus Ran GTPase binding nuclear envelope 2 iron, 2 sulfur cluster binding phosphoprotein phosphatase activity 4 iron, 4 sulfur cluster binding regulation of transcription from RNA polymerase II promoter mitochondrial matrix embryo development ending in seed dormancy protein dephosphorylation | details |
| TreatCFM001859 | tetrapyrrole biosynthesis I (from glutamate) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Phagosome microtubule-based process structural constituent of cytoskeleton beta-galactosidase activity response to stress | details |
| TreatCFM001860 | beta-galactosidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc retrograde vesicle-mediated transport, Golgi to ER ER to Golgi vesicle-mediated transport SNARE interactions in vesicular transport carbohydrate binding | details |
| TreatCFM001983 | adenosine ribonucleotides de novo biosynthesis protein export from nucleus mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) nuclear export signal receptor activity protein import into nucleus peptidyl-tyrosine dephosphorylation nuclear envelope proton-transporting ATPase activity, rotational mechanism proton-transporting ATP synthase activity, rotational mechanism protein tyrosine phosphatase activity Ran GTPase binding ATP synthesis coupled proton transport formation of glycosidic bonds, GlycosylTransferases: GTnc Oxidative phosphorylation | details |
| TreatCFM002017 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Glucagon signaling pathway protein export from nucleus response to sucrose protein maturation by iron-sulfur cluster transfer cuticle hydrocarbon biosynthetic process cellular iron ion homeostasis cellular response to nitrogen levels [2Fe-2S] cluster assembly aspartate family amino acid biosynthetic process phosphorylation alkane biosynthetic process iron-sulfur transferase activity nuclear export signal receptor activity aspartate kinase activity ferrous iron binding homoserine dehydrogenase activity Apelin signaling pathway protein import into nucleus cellular amino acid biosynthetic process Ran GTPase binding 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding amino acid binding phosphoprotein phosphatase activity NADP binding Biosynthesis of amino acids nuclear envelope | details |
| TreatCFM002062 | Transcription_related, Transcription factor: BBR-BPC | details |
| TreatCFM002156 | L-histidine transmembrane transport arginine transmembrane transport L-ornithine transmembrane transport CDP-diacylglycerol biosynthetic process L-arginine import L-lysine transmembrane transport proline biosynthetic process phosphatidate cytidylyltransferase activity L-lysine transmembrane transporter activity L-histidine transmembrane transporter activity arginine transmembrane transporter activity L-ornithine transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc integral component of membrane 26,27-dehydrozymosterol metabolism CDP-diacylglycerol biosynthesis II urate degradation to allantoin I aminoacyl-tRNA hydrolase activity ornithine-citrulline shuttle CDP-diacylglycerol biosynthesis I plant sterol biosynthesis Glycerophospholipid metabolism Starch and sucrose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |