TreatCFM001781's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ras signaling pathway | 0.004748974 | KEGG pathway |
| cytoskeletal part | 0.020633518 | GO:0044430 |
| microtubule cytoskeleton | 0.020633518 | GO:0015630 |
| cytokinesis by cell plate formation | 0.028314964 | GO:0000911 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004106 | - | - |
| CRO_T015645 | AT2G35630 (0) | MOR1|MICROTUBULE ORGANIZATION 1 |
| CRO_T015646 | AT2G35630 (0) | MOR1|MICROTUBULE ORGANIZATION 1 |
| CRO_T016279 | AT3G54840 (3.00E-20) | ARA6; ARA-6; AtARA6; ATRAB5C; ATRABF1; RABF1|Ras-related small GTP-binding family protein |
| CRO_T021347 | AT4G20850 (0) | TPP2|tripeptidyl peptidase ii |
| CRO_T025892 | AT5G07320 (1.00E-16) | APC3|ATP/phosphate carrier 3 |
| CRO_T026647 | AT1G28410 (1.00E-39) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001396 | MicroRNAs in cancer L-amino acid transport L-alpha-amino acid transmembrane transport L-amino acid transmembrane transporter activity response to stress antiporter activity | details |
| TreatCFM001492 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc alpha-1,3-mannosyltransferase activity galactoside 2-alpha-L-fucosyltransferase activity mannosylglycoprotein endo-beta-mannosidase activity ceramide metabolic process L-amino acid transport fucosylation nucleocytoplasmic transport xyloglucan biosynthetic process mannosylation L-alpha-amino acid transmembrane transport hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides plant-type cell wall biogenesis fatty acid β-oxidation II (peroxisome) protein N-glycosylation (eukaryotic, high mannose) unsaturated, even numbered fatty acid β-oxidation L-amino acid transmembrane transporter activity MicroRNAs in cancer translation | details |
| TreatCFM001782 | translation initiation factor binding formation of translation preinitiation complex regulation of translational initiation eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex translation initiation factor activity RNA transport Transcriptional misregulation in cancers microtubule cytoskeleton cytoskeletal part cytokinesis by cell plate formation Transcription_related, Transcription factor: FAR1 | details |
| TreatCFM001808 | xyloglucan biosynthesis calcium ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc Proteasome calcium-dependent phospholipid binding helicase activity | details |
| TreatCFM001854 | glucan 1,3-alpha-glucosidase activity thiol oxidase activity adenosine ribonucleotides de novo biosynthesis posttranscriptional regulation of gene expression heat acclimation mitochondrion proton-transporting ATP synthase complex, catalytic core F(1) N-Glycan biosynthesis response to cold hyperosmotic salinity response response to water deprivation ATP synthesis coupled proton transport ATP hydrolysis coupled proton transport proton-transporting ATPase activity, rotational mechanism proton-transporting ATP synthase activity, rotational mechanism identical protein binding response to abscisic acid | details |
| TreatCFM001924 | Ras signaling pathway Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis peptidyl-arginine methylation cellular response to extracellular stimulus 1-phosphatidylinositol 4-kinase activity protein-arginine omega-N asymmetric methyltransferase activity SUMO transferase activity histone-arginine N-methyltransferase activity Transcription_related, Transcription regulator: PHD protein sumoylation cell growth phosphatidylinositol phosphorylation response to salt stress protein autophosphorylation zinc ion binding | details |
| TreatCFM002113 | Oxidative phosphorylation mitochondrial respiratory chain complex IV aerobic respiration I (cytochrome c) proton-transporting ATP synthase activity, rotational mechanism cytochrome-c oxidase activity mitochondrial inner membrane serine-type endopeptidase activity | details |
| TreatCFM002136 | Ubiquitin_Proteasome_system, DUB: USP thiol oxidase activity Ras signaling pathway maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular protein metabolic process cytoplasmic translation cysteine-type peptidase activity poly(A) RNA binding metal ion binding identical protein binding small GTPase mediated signal transduction | details |
| TreatCFM002137 | Ubiquitin_Proteasome_system, DUB: USP oxidoreductase activity, acting on peroxide as acceptor antioxidant activity Ras signaling pathway maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular protein metabolic process cytoplasmic translation cysteine-type peptidase activity poly(A) RNA binding metal ion binding small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |