TreatCFM001860's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| beta-galactosidase activity | 0.014157804 | GO:0004565 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.014157804 | cazy family |
| retrograde vesicle-mediated transport, Golgi to ER | 0.024660726 | GO:0006890 |
| ER to Golgi vesicle-mediated transport | 0.025257405 | GO:0006888 |
| SNARE interactions in vesicular transport | 0.026849807 | KEGG pathway |
| carbohydrate binding | 0.030580703 | GO:0030246 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000256 | - | - |
| CRO_T003235 | AT2G20740 (2.00E-35) | Tetraspanin family protein |
| CRO_T008253 | AT2G46290 (0.000000002) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T009241 | AT2G28470 (0) | BGAL8|beta-galactosidase 8 |
| CRO_T009926 | AT1G51740 (6.00E-100) | ATUFE1|ORTHOLOG OF YEAST UFE1 (UNKNOWN FUNCTION-ESSENTIAL 1); SYP81|syntaxin of plants 81 |
| CRO_T013404 | AT3G24530 (7.00E-11) | AAA-type ATPase family protein / ankyrin repeat family protein |
| CRO_T013838 | AT1G48200 (8.00E-14) | unknown protein |
| CRO_T025522 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000931 | urate degradation to allantoin I hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C2C2-Dof potassium ion binding pyruvate kinase activity glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process | details |
| TreatCFM001051 | 3-deoxy-7-phosphoheptulonate synthase activity UMP kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc nucleotide phosphorylation pyrimidine nucleotide biosynthetic process aromatic amino acid family biosynthetic process RNA metabolic process 3-dehydroquinate biosynthesis I UTP and CTP de novo biosynthesis xylan biosynthesis cellulose biosynthesis pyrimidine ribonucleotides interconversion Pyrimidine metabolism Biosynthesis of amino acids | details |
| TreatCFM001359 | L-asparagine biosynthesis I L-asparagine biosynthesis II superpathway of L-asparagine biosynthesis 3β-hydroxysesquiterpene lactone biosynthesis stomatal complex patterning stomatal complex development L-glutamine degradation I superpathway of aspartate and asparagine biosynthesis thioredoxin pathway DNA-directed RNA polymerase IV complex DNA-directed RNA polymerase V complex Cytochrome_P450, Cytochrome P450: CYP71A hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Mismatch repair nucleic acid metabolic process DNA-directed RNA polymerase II, core complex | details |
| TreatCFM001512 | Mismatch repair hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc L-asparagine biosynthesis I L-asparagine biosynthesis II superpathway of L-asparagine biosynthesis L-glutamine degradation I superpathway of aspartate and asparagine biosynthesis thioredoxin pathway nucleic acid metabolic process beta-galactosidase activity electron carrier activity protein disulfide oxidoreductase activity organic cyclic compound binding carbohydrate binding heterocyclic compound binding | details |
| TreatCFM001654 | protein export from nucleus nuclear export signal receptor activity protein import into nucleus Ran GTPase binding nuclear envelope | details |
| TreatCFM001859 | tetrapyrrole biosynthesis I (from glutamate) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Phagosome microtubule-based process structural constituent of cytoskeleton beta-galactosidase activity response to stress | details |
| TreatCFM002100 | mitochondrion arginine transmembrane transporter activity L-ornithine transmembrane transporter activity proline-tRNA ligase activity L-histidine transmembrane transporter activity auxin binding auxin receptor activity inositol hexakisphosphate binding ornithine-citrulline shuttle EKC/KEOPS complex L-lysine transmembrane transporter activity tRNA threonylcarbamoyladenosine modification prolyl-tRNA aminoacylation regulation of photosynthesis L-ornithine transmembrane transport L-histidine transmembrane transport arginine transmembrane transport L-arginine import adenosine ribonucleotides de novo biosynthesis L-lysine transmembrane transport proline biosynthetic process pollen maturation stamen development formation of glycosidic bonds, GlycosylTransferases: GTnc plant ovule development mitochondrial proton-transporting ATP synthase complex lateral root formation RNA splicing seed development SCF ubiquitin ligase complex embryo sac development cobalt ion binding ribosome binding chloroplast proton-transporting ATP synthase activity, rotational mechanism ATP synthesis coupled proton transport auxin-activated signaling pathway | details |
| TreatCFM002156 | L-histidine transmembrane transport arginine transmembrane transport L-ornithine transmembrane transport CDP-diacylglycerol biosynthetic process L-arginine import L-lysine transmembrane transport proline biosynthetic process phosphatidate cytidylyltransferase activity L-lysine transmembrane transporter activity L-histidine transmembrane transporter activity arginine transmembrane transporter activity L-ornithine transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc integral component of membrane 26,27-dehydrozymosterol metabolism CDP-diacylglycerol biosynthesis II urate degradation to allantoin I aminoacyl-tRNA hydrolase activity ornithine-citrulline shuttle CDP-diacylglycerol biosynthesis I plant sterol biosynthesis Glycerophospholipid metabolism Starch and sucrose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |