TreatCFM002071's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphatidylinositol-mediated signaling | 0.007506646 | GO:0048015 |
| proteolysis | 0.007506646 | GO:0006508 |
| protein initiator methionine removal | 0.007506646 | GO:0070084 |
| metalloaminopeptidase activity | 0.007817416 | GO:0070006 |
| 1-phosphatidylinositol 4-kinase activity | 0.007817416 | GO:0004430 |
| phosphatidylinositol dephosphorylation | 0.008844504 | GO:0046856 |
| hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | 0.00918654 | cazy family |
| cytosolic ribosome | 0.011694348 | GO:0022626 |
| Cell cycle - Caulobacter | 0.012215977 | KEGG pathway |
| Inositol phosphate metabolism | 0.012987699 | KEGG pathway |
| phosphatidylinositol phosphorylation | 0.015422859 | GO:0046854 |
| 3-phosphoinositide biosynthesis | 0.017687317 | plantCyc |
| D-myo-inositol (1,4,5)-trisphosphate biosynthesis | 0.017687317 | plantCyc |
| D-myo-inositol (1,4,5)-trisphosphate degradation | 0.017687317 | plantCyc |
| homogalacturonan degradation | 0.01803847 | plantCyc |
| protein peptidyl-prolyl isomerization | 0.018194094 | GO:0000413 |
| peptidyl-prolyl cis-trans isomerase activity | 0.036384367 | GO:0003755 |
| protein folding | 0.049266822 | GO:0006457 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002504 | AT1G02560 (8.00E-19) | CLPP5|nuclear encoded CLP protease 5; NCLPP1|NUCLEAR-ENCODED CLPP 1; NCLPP5|NUCLEAR CLPP 5 |
| CRO_T019419 | AT2G45240 (3.00E-157) | MAP1A|methionine aminopeptidase 1A |
| CRO_T022252 | - | - |
| CRO_T025368 | AT3G44600 (5.00E-30) | CYP71|cyclophilin 71 |
| CRO_T027544 | AT1G05630 (0) | 5PTASE13|inositol-polyphosphate 5-phosphatase 13 |
| CRO_T031043 | AT5G53440 (2.00E-76) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000339 | DNA ligation protein initiator methionine removal polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping polynucleotide 5'-phosphatase activity mRNA guanylyltransferase activity metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity mRNA surveillance pathway 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis homogalacturonan degradation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription factor: NAC protein tyrosine phosphatase activity cytosolic ribosome phosphatidylinositol phosphorylation DNA recombination peptidyl-tyrosine dephosphorylation protein peptidyl-prolyl isomerization | details |
| TreatCFM000853 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gluconeogenesis I nucleolar ribonuclease P complex calmodulin-dependent protein kinase activity ribonuclease P activity calcium-dependent protein serine/threonine kinase activity O-acetyltransferase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway gene silencing by RNA RNA phosphodiester bond hydrolysis, endonucleolytic cell wall organization or biogenesis | details |
| TreatCFM000854 | gluconeogenesis I Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gene expression cellular nitrogen compound biosynthetic process cellular macromolecule biosynthetic process calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway primary metabolic process intracellular organelle Spliceosome calmodulin binding serine-type endopeptidase activity | details |
| TreatCFM001239 | starch biosynthesis glucose-1-phosphate adenylyltransferase activity positive regulation of proteasomal ubiquitin-dependent protein catabolic process starch biosynthetic process glycogen biosynthetic process Hedgehog signaling pathway protein ubiquitination involved in ubiquitin-dependent protein catabolic process protein polyubiquitination biosynthetic process ubiquitin ligase complex ubiquitin conjugating enzyme binding Cell cycle - Caulobacter Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TreatCFM001412 | formation of glycosidic bonds, GlycosylTransferases: GTnc Cell cycle - Caulobacter Transcription_related, Transcription factor: bZIP chaperone-mediated protein folding protein peptidyl-prolyl isomerization FK506 binding peptidyl-prolyl cis-trans isomerase activity serine-type endopeptidase activity | details |
| TreatCFM001452 | UDP-N-acetyl-D-glucosamine biosynthesis II mRNA guanylyltransferase activity glutamine-fructose-6-phosphate transaminase (isomerizing) activity polynucleotide 5'-phosphatase activity serine-type endopeptidase activity serine-type exopeptidase activity 7-methylguanosine mRNA capping UDP-N-acetylglucosamine metabolic process carbohydrate derivative biosynthetic process polynucleotide 5' dephosphorylation proteolysis DNA ligation voltage-gated chloride channel activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity Renin-angiotensin system chloride transport fructose 6-phosphate metabolic process cellular macromolecule biosynthetic process regulation of anion transmembrane transport Cell cycle - Caulobacter peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity DNA recombination unidimensional cell growth DNA metabolic process ion transmembrane transport nucleotidyltransferase activity Amino sugar and nucleotide sugar metabolism mRNA surveillance pathway DNA repair | details |
| TreatCFM001638 | Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family protein kinase activity | details |
| TreatCFM001855 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis cytosol nuclear envelope chaperone-mediated protein folding cell wall organization or biogenesis protein import into nucleus protein peptidyl-prolyl isomerization protein transporter activity peptidyl-prolyl cis-trans isomerase activity FK506 binding O-acetyltransferase activity serine-type endopeptidase activity | details |
| TreatCFM001878 | Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis cellular response to extracellular stimulus SUMO transferase activity 1-phosphatidylinositol 4-kinase activity Transcription_related, Transcription regulator: PHD RNA polymerase II transcription cofactor activity cell growth phosphatidylinositol phosphorylation protein sumoylation response to salt stress protein autophosphorylation regulation of transcription from RNA polymerase II promoter protein peptidyl-prolyl isomerization Transcription_related, Transcription factor: NAC mediator complex peptidyl-prolyl cis-trans isomerase activity | details |
| TreatCFM001945 | Ubiquitin_Proteasome_system, E3: HECT DNA endoreduplication trichome branching Cell cycle - Caulobacter Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process plasma membrane | details |
| TreatCFM002127 | DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity Cell cycle - Caulobacter DNA ligase (ATP) activity protein tyrosine/serine/threonine phosphatase activity cellular macromolecule biosynthetic process mRNA surveillance pathway peptidyl-tyrosine dephosphorylation DNA recombination protein tyrosine phosphatase activity DNA metabolic process nucleotidyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |