TreatCFM001927's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: Rcd1-like | 0.002925532 | TF family |
| protein targeting to chloroplast | 0.005360306 | GO:0045036 |
| negative regulation of translation | 0.005360306 | GO:0017148 |
| CCR4-NOT core complex | 0.005849767 | GO:0030015 |
| hydrolase activity, acting on acid anhydrides | 0.010119663 | GO:0016817 |
| cytoplasmic mRNA processing body | 0.010225752 | GO:0000932 |
| Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family | 0.012169917 | kinase family |
| RNA degradation | 0.013051924 | KEGG pathway |
| zinc ion binding | 0.030517493 | GO:0008270 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004111 | AT5G50860 (3.00E-114) | Protein kinase superfamily protein |
| CRO_T007476 | AT2G32550 (9.00E-22) | Cell differentiation, Rcd1-like protein |
| CRO_T016445 | AT3G54360 (1.00E-134) | NCA1|NO CATALASE ACTIVITY 1 |
| CRO_T018287 | AT2G41760 (2.00E-25) | unknown protein |
| CRO_T027859 | AT5G20300 (0) | Toc90|translocon at the outer envelope membrane of chloroplasts 90 |
| CRO_T029203 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001574 | Transcription_related, Transcription regulator: Rcd1-like hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds CCR4-NOT core complex DNA-templated transcription, initiation negative regulation of translation nitrogen compound metabolic process cellular protein metabolic process Alanine, aspartate and glutamate metabolism cytoplasmic mRNA processing body Basal transcription factors RNA degradation formation of glycosidic bonds, GlycosylTransferases: GTnc protein heterodimerization activity transferase activity, transferring acyl groups | details |
| TreatCFM001833 | regulation of RNA biosynthetic process regulation of fatty acid beta-oxidation regulation of photorespiration AMP biosynthetic process sigma factor activity ER retention sequence binding hydrolase activity, acting on acid anhydrides adenosine kinase activity protein retention in ER lumen protein targeting to chloroplast glyoxylate cycle L-malate dehydrogenase activity ribokinase activity glyoxysome D-ribose metabolic process RNA metabolic process malate metabolic process carbohydrate phosphorylation tricarboxylic acid cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) TCA cycle II (plants and fungi) chloroplast Photosynthesis Carbon metabolism | details |
| TreatCFM001919 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Transcription_related, Transcription factor: bHLH Phenylpropanoid biosynthesis | details |
| TreatCFM001926 | [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity protein kinase activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Transcription_related, Transcription regulator: SET chloroplast | details |
| TreatCFM001986 | L-alanine biosynthesis III molybdenum cofactor biosynthesis tRNA wobble position uridine thiolation chromosome condensation protein targeting to chloroplast Cell cycle - yeast Fanconi anemia pathway sulfurtransferase activity hydrolase activity, acting on acid anhydrides condensed chromosome mitotic nuclear division zinc II ion transmembrane transport | details |
| TreatCFM002045 | Transcription_related, Transcription regulator: Rcd1-like protein kinase activity sucrose-phosphate synthase activity sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose synthase activity CCR4-NOT core complex negative regulation of translation sucrose metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family cytoplasmic mRNA processing body RNA degradation Starch and sucrose metabolism | details |
| TreatCFM002046 | protein kinase activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Phenylpropanoid biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |