TreatCFM001919's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family | 0.013276273 | kinase family |
| acetaldehyde biosynthesis I | 0.017037374 | plantCyc |
| detoxification of reactive carbonyls in chloroplasts | 0.017037374 | plantCyc |
| farnesylcysteine salvage pathway | 0.017037374 | plantCyc |
| geraniol and geranial biosynthesis | 0.017037374 | plantCyc |
| mannitol degradation II | 0.017037374 | plantCyc |
| pyruvate fermentation to ethanol II | 0.017037374 | plantCyc |
| traumatin and (Z)-3-hexen-1-yl acetate biosynthesis | 0.017037374 | plantCyc |
| Transcription_related, Transcription factor: bHLH | 0.021418771 | TF family |
| Phenylpropanoid biosynthesis | 0.024572761 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004111 | AT5G50860 (3.00E-114) | Protein kinase superfamily protein |
| CRO_T011540 | AT2G20180 (3.00E-23) | PIF1|PHY-INTERACTING FACTOR 1; PIL5|phytochrome interacting factor 3-like 5 |
| CRO_T013724 | AT1G59780 (2.00E-22) | NB-ARC domain-containing disease resistance protein |
| CRO_T015615 | AT1G72680 (7.00E-127) | ATCAD1|CINNAMYL ALCOHOL DEHYDROGENASE 1; CAD1|cinnamyl-alcohol dehydrogenase |
| CRO_T018287 | AT2G41760 (2.00E-25) | unknown protein |
| CRO_T024900 | AT1G58390 (8.00E-55) | Disease resistance protein (CC-NBS-LRR class) family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001257 | Indole alkaloid biosynthesis acetaldehyde biosynthesis I ajmaline and sarpagine biosynthesis detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II scopoletin biosynthesis traumatin and (Z)-3-hexen-1-yl acetate biosynthesis vindoline and vinblastine biosynthesis Phenylpropanoid biosynthesis | details |
| TreatCFM001485 | photosystem II oxygen evolving complex assembly protein maturation by iron-sulfur cluster transfer single-organism transport epoxide hydrolase activity ferrous iron binding Transcription_related, Transcription factor: bHLH iron-sulfur cluster assembly Photosynthesis single-organism cellular process protein transport protein transporter activity 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding mitochondrial matrix chloroplast part membrane part chloroplast thylakoid photosystem II | details |
| TreatCFM001785 | chloroplast photosystem II oxygen evolving complex assembly regulation of pentose-phosphate shunt 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity epoxide hydrolase activity cell morphogenesis single-organism transport cytoskeleton organization gluconeogenesis glycolysis I (from glucose 6-phosphate) Transcription_related, Transcription factor: bHLH photosystem II oxygen evolving complex chloroplast part extrinsic component of membrane glycolytic process single-organism cellular process protein transport membrane part thylakoid actin binding protein transporter activity Photosynthesis | details |
| TreatCFM001886 | Transcription_related, Transcription factor: G2-like S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis aminoacyl-tRNA ligase activity methionine adenosyltransferase activity ribokinase activity adenosine kinase activity nucleic acid binding AMP biosynthetic process D-ribose metabolic process S-adenosylmethionine biosynthetic process tRNA aminoacylation for protein translation ethylene biosynthesis I (plants) one-carbon metabolic process carbohydrate phosphorylation metal ion binding glycolysis IV (plant cytosol) Aminoacyl-tRNA biosynthesis Biosynthesis of amino acids glycolysis I (from glucose 6-phosphate) single-organism cellular process chloroplast Photosynthesis | details |
| TreatCFM001926 | [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity protein kinase activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Transcription_related, Transcription regulator: SET chloroplast | details |
| TreatCFM001927 | Transcription_related, Transcription regulator: Rcd1-like protein targeting to chloroplast negative regulation of translation CCR4-NOT core complex hydrolase activity, acting on acid anhydrides cytoplasmic mRNA processing body Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family RNA degradation zinc ion binding | details |
| TreatCFM002030 | nuclear-transcribed mRNA catabolic process large ribosomal subunit rRNA binding acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis ribosomal large subunit assembly cytoplasmic translation rRNA processing preribosome, large subunit precursor Phenylpropanoid biosynthesis cytosolic large ribosomal subunit nucleolus Spliceosome Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: MYB | details |
| TreatCFM002045 | Transcription_related, Transcription regulator: Rcd1-like protein kinase activity sucrose-phosphate synthase activity sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose synthase activity CCR4-NOT core complex negative regulation of translation sucrose metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family cytoplasmic mRNA processing body RNA degradation Starch and sucrose metabolism | details |
| TreatCFM002046 | protein kinase activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Phenylpropanoid biosynthesis | details |
| TreatCFM002155 | Cytochrome_P450, Cytochrome P450: CYP73A Degradation of aromatic compounds trans-cinnamate 4-monooxygenase activity phenylpropanoid biosynthesis, initial reactions phenylalanine ammonia-lyase activity lignin metabolic process protein N-glycosylation (eukaryotic, high mannose) anion transport suberin monomers biosynthesis transmembrane transporter activity cysteine-type endopeptidase activity extracellular space Lysosome integral component of membrane vacuolar membrane | details |
| TreatCFM002165 | formation of glycosidic bonds, GlycosylTransferases: GTnc RNA splicing RNA modification acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis response to stress Phenylpropanoid biosynthesis | details |
| TreatCFM002174 | acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis DNA replication response to stress Phenylpropanoid biosynthesis | details |
| TreatCFM002177 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis S-adenosylmethionine biosynthetic process one-carbon metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc glycogen (starch) synthase activity methionine adenosyltransferase activity starch binding cytoplasmic translation ethylene biosynthesis I (plants) starch biosynthesis Transcription_related, Transcription regulator: SNF2 metal ion binding cytosolic large ribosomal subunit Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |