TreatCFM002002's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| adenosine ribonucleotides de novo biosynthesis | 0.007776332 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.009419037 | cazy family |
| vacuolar proton-transporting V-type ATPase, V1 domain | 0.010424299 | GO:0000221 |
| protein glycosylation | 0.021384912 | GO:0006486 |
| ATP hydrolysis coupled proton transport | 0.021384912 | GO:0015991 |
| small GTPase mediated signal transduction | 0.028843682 | GO:0007264 |
| proton-transporting ATPase activity, rotational mechanism | 0.032401382 | GO:0046961 |
| galactosyltransferase activity | 0.032401382 | GO:0008378 |
| cell part | 0.046793053 | GO:0044464 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001721 | AT5G65960 (7.00E-106) | GTP binding |
| CRO_T001737 | AT1G57820 (1.00E-15) | ORTH2|ORTHRUS 2; VIM1|VARIANT IN METHYLATION 1 |
| CRO_T002417 | AT1G64090 (9.00E-31) | RTNLB3|Reticulan like protein B3 |
| CRO_T008167 | AT3G42050 (8.00E-139) | vacuolar ATP synthase subunit H family protein |
| CRO_T012459 | AT3G13410 (3.00E-65) | unknown protein |
| CRO_T012875 | AT1G65020 (2.00E-33) | unknown protein |
| CRO_T017742 | AT4G32120 (1.00E-53) | Galactosyltransferase family protein |
| CRO_T024676 | AT5G02620 (2.00E-11) | ANK1|ankyrin-like1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000356 | adenosine ribonucleotides de novo biosynthesis Protein_kinases_phosphatases, PPC:4.1.4: MAP2K Transcription_related, Transcription regulator: LUG xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process defense response, incompatible interaction activation of MAPK activity 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene vacuolar proton-transporting V-type ATPase, V1 domain glycerol-3-phosphate O-acyltransferase activity 9,9'-dicis-carotene:quinone oxidoreductase activity MAP kinase kinase activity 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity cutin biosynthetic process integral component of Golgi membrane formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity glycerol-3-phosphate 2-O-acyltransferase activity galactosyltransferase activity phosphatase activity | details |
| TreatCFM000370 | serine-type exopeptidase activity tRNA (guanine) methyltransferase activity RNA biosynthetic process tRNA methylation nuclease activity nucleic acid phosphodiester bond hydrolysis DNA-directed RNA polymerase activity | details |
| TreatCFM001881 | alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity tRNA binding viral nucleocapsid intracellular ribonucleoprotein complex Oxidative phosphorylation | details |
| TreatCFM001882 | Ubiquitin_Proteasome_system, E1: ThiF tetrapyrrole biosynthesis I (from glutamate) regulation of actin filament polymerization alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity glutamyl-tRNA reductase activity alanine-tRNA ligase activity protoporphyrinogen IX biosynthetic process regulation of translational fidelity phospholipid translocation actin cytoskeleton very long chain fatty acid biosynthesis I phospholipid-translocating ATPase activity tRNA binding Fatty acid elongation Porphyrin and chlorophyll metabolism | details |
| TreatCFM001993 | glutaminyl-tRNAgln biosynthesis via transamidation mitochondrial RNA metabolic process glutaminyl-tRNAGln biosynthesis via transamidation glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity Transcription_related, Transcription regulator: SNF2 protein homooligomerization mitochondrial translation glutamyl-tRNA(Gln) amidotransferase complex alkaloid metabolic process RNA modification protein domain specific binding MAPK signaling pathway - yeast Aminoacyl-tRNA biosynthesis Homologous recombination small GTPase mediated signal transduction | details |
| TreatCFM002008 | MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation Transcription_related, Transcription factor: TUB Transcription_related, Transcription regulator: SWI/SNF-BAF60b cilium mitochondrial inner membrane peptidase complex removal of superoxide radicals thylakoid membrane organization mitochondrial respiratory chain complex assembly protein processing involved in protein targeting to mitochondrion signal peptide processing protein localization to cilium Protein export phosphatidylinositol binding superoxide dismutase activity mitochondrial matrix serine-type endopeptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |