TreatCFM001882's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E1: ThiF | 0.005307296 | ubs family |
| tetrapyrrole biosynthesis I (from glutamate) | 0.008854906 | plantCyc |
| regulation of actin filament polymerization | 0.009635513 | GO:0030833 |
| alanyl-tRNA aminoacylation | 0.009635513 | GO:0006419 |
| Ser-tRNA(Ala) hydrolase activity | 0.012979946 | GO:0002196 |
| glutamyl-tRNA reductase activity | 0.012979946 | GO:0008883 |
| alanine-tRNA ligase activity | 0.014418327 | GO:0004813 |
| protoporphyrinogen IX biosynthetic process | 0.015398381 | GO:0006782 |
| regulation of translational fidelity | 0.015398381 | GO:0006450 |
| phospholipid translocation | 0.015398381 | GO:0045332 |
| actin cytoskeleton | 0.016233994 | GO:0015629 |
| very long chain fatty acid biosynthesis I | 0.022457308 | plantCyc |
| phospholipid-translocating ATPase activity | 0.022468676 | GO:0004012 |
| tRNA binding | 0.022468676 | GO:0000049 |
| Fatty acid elongation | 0.030807703 | KEGG pathway |
| Porphyrin and chlorophyll metabolism | 0.035553756 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001721 | AT5G65960 (7.00E-106) | GTP binding |
| CRO_T002551 | AT2G35155 (0) | Trypsin family protein |
| CRO_T012103 | AT1G14710 (9.00E-34) | hydroxyproline-rich glycoprotein family protein |
| CRO_T013949 | AT1G04220 (0) | KCS2|3-ketoacyl-CoA synthase 2 |
| CRO_T015567 | AT1G09940 (0) | HEMA2|Glutamyl-tRNA reductase family protein |
| CRO_T017911 | AT2G42780 (3.00E-48) | unknown protein |
| CRO_T018721 | AT4G09810 (6.00E-43) | Nucleotide-sugar transporter family protein |
| CRO_T024899 | AT1G13210 (0) | ACA.l|autoinhibited Ca2+/ATPase II |
| CRO_T027761 | AT3G16565 (2.00E-44) | alanine-tRNA ligases; nucleic acid binding; ligases, forming aminoacyl-tRNA and related compounds; nucleotide binding; ATP binding |
| CRO_T028917 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000942 | Fanconi anemia pathway Peroxisome Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Plant-pathogen interaction | details |
| TreatCFM001479 | magnesium ion transmembrane transport magnesium ion transport magnesium ion transmembrane transporter activity regulation of actin filament polymerization response to very low light intensity stimulus alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity tRNA binding vegetative to reproductive phase transition of meristem actin cytoskeleton integral component of membrane viral nucleocapsid intracellular ribonucleoprotein complex Endocytosis | details |
| TreatCFM001705 | cytoplasmic translational termination plastid translation endopeptidase activity adenyl-nucleotide exchange factor activity ribosomal large subunit binding chaperone binding isomerase activity regulation of catalytic activity protein homodimerization activity mitochondrial matrix thylakoid Oxidative phosphorylation copper ion binding | details |
| TreatCFM001881 | alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity regulation of translational fidelity tRNA binding viral nucleocapsid intracellular ribonucleoprotein complex Oxidative phosphorylation | details |
| TreatCFM001993 | glutaminyl-tRNAgln biosynthesis via transamidation mitochondrial RNA metabolic process glutaminyl-tRNAGln biosynthesis via transamidation glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity Transcription_related, Transcription regulator: SNF2 protein homooligomerization mitochondrial translation glutamyl-tRNA(Gln) amidotransferase complex alkaloid metabolic process RNA modification protein domain specific binding MAPK signaling pathway - yeast Aminoacyl-tRNA biosynthesis Homologous recombination small GTPase mediated signal transduction | details |
| TreatCFM002002 | adenosine ribonucleotides de novo biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc vacuolar proton-transporting V-type ATPase, V1 domain protein glycosylation ATP hydrolysis coupled proton transport small GTPase mediated signal transduction proton-transporting ATPase activity, rotational mechanism galactosyltransferase activity cell part | details |
Expression profiles
 Show details about module gene expression profiling |