TreatCFM002013's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mitochondrial inner membrane presequence translocase complex | 0.00324891 | GO:0005744 |
| integral component of mitochondrial inner membrane | 0.00324891 | GO:0031305 |
| acetyl-CoA carboxylase complex | 0.00324891 | GO:0009317 |
| Ubiquitin_Proteasome_system, DUB: USP | 0.004778752 | ubs family |
| fatty acid biosynthesis initiation I | 0.005577683 | plantCyc |
| octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) | 0.005577683 | plantCyc |
| protein import into chloroplast stroma | 0.007386615 | GO:0045037 |
| protein import into mitochondrial matrix | 0.011071739 | GO:0030150 |
| protein channel activity | 0.012137316 | GO:0015266 |
| acetyl-CoA carboxylase activity | 0.012137316 | GO:0003989 |
| single-organism process | 0.019157014 | GO:0044699 |
| fatty acid biosynthetic process | 0.024632072 | GO:0006633 |
| Carbon metabolism | 0.047108101 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008468 | AT5G54880 (4.00E-66) | DTW domain-containing protein |
| CRO_T013444 | AT2G38040 (0) | CAC3|acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit |
| CRO_T022667 | AT1G08760 (0) | Plant protein of unknown function (DUF936) |
| CRO_T026009 | AT2G28900 (1.00E-40) | ATOEP16-1|outer plastid envelope protein 16-1; ATOEP16-L|OUTER PLASTID ENVELOPE PROTEIN 16-L; OEP16|outer envelope protein 16 |
| CRO_T026177 | AT3G49600 (3.00E-18) | UBP26|ubiquitin-specific protease 26 |
| CRO_T028328 | AT3G14890 (0.000000005) | phosphoesterase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000062 | Transcription_related, Transcription factor: PLATZ HAUS complex acetyl-CoA carboxylase complex spindle assembly fatty acid biosynthesis initiation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) acetyl-CoA carboxylase activity fatty acid biosynthetic process Carbon metabolism | details |
| TreatCFM000452 | fatty acid biosynthesis initiation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) acetyl-CoA carboxylase activity acetyl-CoA carboxylase complex fatty acid biosynthetic process Carbon metabolism | details |
| TreatCFM000627 | Transcription_related, Transcription regulator: IWS1 elongin complex Ubiquitin_Proteasome_system, DUB: USP transcription elongation from RNA polymerase II promoter mitochondrial large ribosomal subunit nucleosome ribosomal large subunit assembly single-organism process Necroptosis mRNA surveillance pathway | details |
| TreatCFM000641 | Ubiquitin_Proteasome_system, E3 adaptor: DWD acetyl-CoA carboxylase complex HAUS complex ureidoglycolate hydrolase activity spindle assembly fatty acid biosynthesis initiation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) acetyl-CoA carboxylase activity fatty acid biosynthetic process | details |
| TreatCFM001148 | Carbon metabolism fatty acid biosynthesis initiation I L-cysteine biosynthesis I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) acetyl-CoA carboxylase activity cysteine synthase activity transferase activity U2-type spliceosomal complex U12-type spliceosomal complex acetyl-CoA carboxylase complex vacuolar proton-transporting V-type ATPase, V0 domain U2 snRNP precatalytic spliceosome cysteine biosynthetic process from serine vacuolar acidification ATP hydrolysis coupled proton transport cellular amino acid biosynthetic process catalytic step 2 spliceosome mRNA splicing, via spliceosome proton-transporting ATPase activity, rotational mechanism fatty acid biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001340 | Prp19 complex acetyl-CoA carboxylase complex prespliceosome catalytic step 1 spliceosome post-mRNA release spliceosomal complex leucine catabolic process fatty acid biosynthesis initiation I gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) gibberellin biosynthesis III (early C-13 hydroxylation) octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) scopoletin biosynthesis umbelliferone biosynthesis catalytic step 2 spliceosome acetyl-CoA carboxylase activity iron-sulfur cluster binding mRNA splicing, via spliceosome fatty acid biosynthetic process oxidation-reduction process | details |
| TreatCFM001426 | Rap1 signaling pathway thioredoxin pathway (S)-2-hydroxy-acid oxidase activity Ubiquitin_Proteasome_system, DUB: USP cytoskeleton cell protein disulfide oxidoreductase activity actin binding cytosolic large ribosomal subunit electron carrier activity | details |
| TreatCFM001874 | thioredoxin pathway adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription regulator: AUX/IAA Apelin signaling pathway response to sucrose cellular response to nitrogen levels response to cold Plant hormone signal transduction | details |
| TreatCFM001920 | response to aluminum ion response to acidic pH chaperone-mediated protein folding Transcription_related, Transcription factor: C2H2 mRNA surveillance pathway RNA transport | details |
| TreatCFM001924 | Ras signaling pathway Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis peptidyl-arginine methylation cellular response to extracellular stimulus 1-phosphatidylinositol 4-kinase activity protein-arginine omega-N asymmetric methyltransferase activity SUMO transferase activity histone-arginine N-methyltransferase activity Transcription_related, Transcription regulator: PHD protein sumoylation cell growth phosphatidylinositol phosphorylation response to salt stress protein autophosphorylation zinc ion binding | details |
Expression profiles
 Show details about module gene expression profiling |