TreatCFM001920's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to aluminum ion | 0.002954864 | GO:0010044 |
| response to acidic pH | 0.002954864 | GO:0010447 |
| chaperone-mediated protein folding | 0.010820102 | GO:0061077 |
| Transcription_related, Transcription factor: C2H2 | 0.013753369 | TF family |
| mRNA surveillance pathway | 0.040243127 | KEGG pathway |
| RNA transport | 0.040243127 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006323 | AT3G62900 (1.00E-61) | CW-type Zinc Finger |
| CRO_T013400 | AT1G28260 (7.00E-45) | Telomerase activating protein Est1 |
| CRO_T024156 | AT1G34370 (8.00E-105) | STOP1|sensitive to proton rhizotoxicity 1 |
| CRO_T024612 | AT3G21640 (7.00E-15) | FKBP42|FK506-BINDING PROTEIN 42; TWD1|TWISTED DWARF 1; UCU2|ULTRACURVATA 2 |
| CRO_T028087 | AT1G49760 (0) | PAB8|poly(A) binding protein 8 |
| CRO_T028328 | AT3G14890 (0.000000005) | phosphoesterase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000627 | Transcription_related, Transcription regulator: IWS1 elongin complex Ubiquitin_Proteasome_system, DUB: USP transcription elongation from RNA polymerase II promoter mitochondrial large ribosomal subunit nucleosome ribosomal large subunit assembly single-organism process Necroptosis mRNA surveillance pathway | details |
| TreatCFM000628 | transcription elongation from RNA polymerase II promoter Transcription_related, Transcription regulator: IWS1 elongin complex fatty acid elongation -- saturated nucleosome stearate biosynthesis II (bacteria and plants) palmitate biosynthesis II (bacteria and plants) Fatty acid metabolism mRNA surveillance pathway Necroptosis | details |
| TreatCFM000758 | response to aluminum ion response to acidic pH regulation of apoptotic process negative regulation of mRNA splicing, via spliceosome ATP metabolic process 4-aminobutanoate degradation I 4-aminobutanoate degradation IV proton-transporting V-type ATPase, V1 domain benzoate biosynthesis III (CoA-dependent, non-β-oxidative) fatty acid α-oxidation I fatty acid elongation -- saturated L-glutamate degradation IV cellular component organization chaperone-mediated protein folding phosphatidylinositol phosphorylation | details |
| TreatCFM000826 | mRNA surveillance pathway Biotin metabolism Renin-angiotensin system Ubiquitin_Proteasome_system, E3: HECT biotin synthase activity serine-type exopeptidase activity | details |
| TreatCFM001370 | gluconeogenesis I lipid binding Transcription_related, Transcription factor: NF-YA D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) GTP cyclohydrolase II activity 3,4-dihydroxy-2-butanone-4-phosphate synthase activity Riboflavin metabolism malate dehydrogenase (decarboxylating) (NAD+) activity malate metabolic process riboflavin biosynthetic process phosphatidylinositol dephosphorylation microtubule cytoskeleton cytoskeletal part | details |
| TreatCFM001924 | Ras signaling pathway Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis peptidyl-arginine methylation cellular response to extracellular stimulus 1-phosphatidylinositol 4-kinase activity protein-arginine omega-N asymmetric methyltransferase activity SUMO transferase activity histone-arginine N-methyltransferase activity Transcription_related, Transcription regulator: PHD protein sumoylation cell growth phosphatidylinositol phosphorylation response to salt stress protein autophosphorylation zinc ion binding | details |
| TreatCFM001938 | Cell cycle DNA replication mRNA surveillance pathway | details |
| TreatCFM002001 | chaperone-mediated protein folding cytoplasmic translation FK506 binding peptidyl-prolyl cis-trans isomerase activity | details |
| TreatCFM002005 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family intracellular distribution of mitochondria translational initiation | details |
| TreatCFM002013 | mitochondrial inner membrane presequence translocase complex integral component of mitochondrial inner membrane acetyl-CoA carboxylase complex Ubiquitin_Proteasome_system, DUB: USP fatty acid biosynthesis initiation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) protein import into chloroplast stroma protein import into mitochondrial matrix protein channel activity acetyl-CoA carboxylase activity single-organism process fatty acid biosynthetic process Carbon metabolism | details |
| TreatCFM002033 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: IWS1 elongin complex benzoate biosynthesis I (CoA-dependent, β-oxidative) transcription elongation from RNA polymerase II promoter chitin catabolic process glutathione metabolic process chitinase activity chitin binding Amino sugar and nucleotide sugar metabolism Glutathione metabolism mRNA surveillance pathway glutathione transferase activity | details |
Expression profiles
 Show details about module gene expression profiling |