TreatCFM002032's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| sucrose metabolic process | 0.002480143 | GO:0005985 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.004962045 | cazy family |
| glutamine N-phenylacetyltransferase activity | 0.00608174 | GO:0047947 |
| glycogen (starch) synthase activity | 0.006837712 | GO:0004373 |
| starch binding | 0.006837712 | GO:2001070 |
| sucrose-phosphate synthase activity | 0.006837712 | GO:0046524 |
| sucrose synthase activity | 0.00729162 | GO:0016157 |
| starch biosynthesis | 0.011349197 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.011349197 | plantCyc |
| sucrose biosynthesis II | 0.011349197 | plantCyc |
| Plant-pathogen interaction | 0.040489539 | KEGG pathway |
| Starch and sucrose metabolism | 0.040489539 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001430 | AT1G54115 (2.00E-87) | ATCCX4|CATION CALCIUM EXCHANGER 4 |
| CRO_T004285 | AT1G04920 (0) | ATSPS3F|sucrose phosphate synthase 3F |
| CRO_T004491 | AT1G09320 (1.00E-22) | agenet domain-containing protein |
| CRO_T008501 | AT3G01180 (1.00E-33) | AtSS2|starch synthase 2 |
| CRO_T013667 | AT3G03400 (5.00E-20) | EF hand calcium-binding protein family |
| CRO_T015780 | AT1G63330 (4.00E-21) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T017168 | AT3G10970 (4.00E-126) | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001517 | Plant-pathogen interaction Cytochrome_P450, Cytochrome P450: CYP81K folate polyglutamylation II glutamate removal from folates UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) peptide-methionine (S)-S-oxide reductase activity gamma-glutamyl-peptidase activity Cytochrome_P450, Cytochrome P450: CYP81D UDP-glucose 4-epimerase activity D-galactose degradation III Cell cycle - yeast Folate biosynthesis tetrahydrofolylpolyglutamate metabolic process chromosome condensation condensed chromosome microtubule cytoskeleton cytoskeletal part UDP-sugars interconversion stachyose degradation Galactose metabolism ADP binding sesamin biosynthesis protein repair indole glucosinolate metabolic process defense response to other organism mitotic nuclear division galactose metabolic process glutamine metabolic process | details |
| TreatCFM001986 | L-alanine biosynthesis III molybdenum cofactor biosynthesis tRNA wobble position uridine thiolation chromosome condensation protein targeting to chloroplast Cell cycle - yeast Fanconi anemia pathway sulfurtransferase activity hydrolase activity, acting on acid anhydrides condensed chromosome mitotic nuclear division zinc II ion transmembrane transport | details |
| TreatCFM002010 | Transcription_related, Transcription factor: ERF | details |
| TreatCFM002081 | Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM002166 | mRNA pseudouridine synthesis tRNA wobble position uridine thiolation positive regulation of transcription from RNA polymerase I promoter t-UTP complex formation of glycosidic bonds, GlycosylTransferases: GTnc 90S preribosome sulfurtransferase activity L-alanine biosynthesis III molybdenum cofactor biosynthesis starch biosynthesis starch binding glycogen (starch) synthase activity pseudouridine synthase activity snoRNA binding Transcription_related, Transcription factor: C3H Ribosome biogenesis in eukaryotes tRNA modification maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome | details |
| TreatCFM002177 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis S-adenosylmethionine biosynthetic process one-carbon metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc glycogen (starch) synthase activity methionine adenosyltransferase activity starch binding cytoplasmic translation ethylene biosynthesis I (plants) starch biosynthesis Transcription_related, Transcription regulator: SNF2 metal ion binding cytosolic large ribosomal subunit Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |