TreatCFM002166's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mRNA pseudouridine synthesis | 0.002606383 | GO:1990481 |
| tRNA wobble position uridine thiolation | 0.002606383 | GO:0002143 |
| positive regulation of transcription from RNA polymerase I promoter | 0.002606383 | GO:0045943 |
| t-UTP complex | 0.002925532 | GO:0034455 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.004253747 | cazy family |
| 90S preribosome | 0.005847174 | GO:0030686 |
| sulfurtransferase activity | 0.006436646 | GO:0016783 |
| L-alanine biosynthesis III | 0.006824224 | plantCyc |
| molybdenum cofactor biosynthesis | 0.007141268 | plantCyc |
| starch biosynthesis | 0.007141268 | plantCyc |
| starch binding | 0.009649976 | GO:2001070 |
| glycogen (starch) synthase activity | 0.009649976 | GO:0004373 |
| pseudouridine synthase activity | 0.012057123 | GO:0009982 |
| snoRNA binding | 0.012214275 | GO:0030515 |
| Transcription_related, Transcription factor: C3H | 0.013515812 | TF family |
| Ribosome biogenesis in eukaryotes | 0.014979899 | KEGG pathway |
| tRNA modification | 0.016912723 | GO:0006400 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.017164039 | GO:0000462 |
| small-subunit processome | 0.018776972 | GO:0032040 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008501 | AT3G01180 (1.00E-33) | AtSS2|starch synthase 2 |
| CRO_T018304 | AT1G08790 (5.00E-21) | Protein of unknown function (DUF1685) |
| CRO_T018861 | AT3G19360 (1.00E-53) | Zinc finger (CCCH-type) family protein |
| CRO_T020394 | AT5G14460 (2.00E-150) | Pseudouridine synthase family protein |
| CRO_T022871 | AT3G06530 (3.00E-20) | ARM repeat superfamily protein |
| CRO_T022914 | AT1G51310 (3.00E-178) | transferases; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001231 | Influenza A Transcription_related, Transcription factor: RWP-RK tRNA wobble position uridine thiolation sulfurtransferase activity L-alanine biosynthesis III transcription corepressor activity molybdenum cofactor biosynthesis zinc II ion transmembrane transport zinc ion transmembrane transporter activity methyltransferase activity | details |
| TreatCFM001725 | Influenza A tRNA wobble position uridine thiolation sulfurtransferase activity L-alanine biosynthesis III transcription corepressor activity molybdenum cofactor biosynthesis small GTPase mediated signal transduction methyltransferase activity | details |
| TreatCFM001986 | L-alanine biosynthesis III molybdenum cofactor biosynthesis tRNA wobble position uridine thiolation chromosome condensation protein targeting to chloroplast Cell cycle - yeast Fanconi anemia pathway sulfurtransferase activity hydrolase activity, acting on acid anhydrides condensed chromosome mitotic nuclear division zinc II ion transmembrane transport | details |
| TreatCFM002032 | sucrose metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc glutamine N-phenylacetyltransferase activity glycogen (starch) synthase activity starch binding sucrose-phosphate synthase activity sucrose synthase activity starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II Plant-pathogen interaction Starch and sucrose metabolism | details |
| TreatCFM002170 | Proteasome L-alanine biosynthesis III molybdenum cofactor biosynthesis sulfurtransferase activity cytosolic proteasome complex nuclear proteasome complex proteasome core complex ribonucleoside-diphosphate reductase complex tRNA wobble position uridine thiolation positive regulation of RNA polymerase II transcriptional preinitiation complex assembly deoxyribonucleoside diphosphate metabolic process deoxyribonucleotide biosynthetic process regulation of cell cycle positive regulation of proteasomal protein catabolic process proteasome regulatory particle, base subcomplex ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor proteasome-activating ATPase activity TBP-class protein binding threonine-type endopeptidase activity ER-associated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: DWD multicellular organism development peptidase activity proteolysis involved in cellular protein catabolic process Purine metabolism RNA transport | details |
| TreatCFM002177 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis S-adenosylmethionine biosynthetic process one-carbon metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc glycogen (starch) synthase activity methionine adenosyltransferase activity starch binding cytoplasmic translation ethylene biosynthesis I (plants) starch biosynthesis Transcription_related, Transcription regulator: SNF2 metal ion binding cytosolic large ribosomal subunit Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |