TreatCFM000723's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| UFM1 hydrolase activity | 0.015418643 | GO:0071567 |
| Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V | 0.021578089 | kinase family |
| Pentose and glucuronate interconversions | 0.022475243 | KEGG pathway |
| non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 | 0.024250255 | cazy family |
| pectate lyase activity | 0.025652593 | GO:0030570 |
| MAP kinase kinase kinase activity | 0.025652593 | GO:0004709 |
| aminopeptidase activity | 0.025652593 | GO:0004177 |
| manganese ion binding | 0.027684753 | GO:0030145 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.036240241 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.036240241 | cazy family |
| activation of MAPKK activity | 0.0465403 | GO:0000186 |
| pectin catabolic process | 0.0465403 | GO:0045490 |
| MAPK cascade | 0.0465403 | GO:0000165 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001295 | AT3G48380 (1.00E-107) | Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 |
| CRO_T002095 | AT1G04680 (1.00E-140) | Pectin lyase-like superfamily protein |
| CRO_T002922 | AT4G29490 (5.00E-85) | Metallopeptidase M24 family protein |
| CRO_T018188 | AT4G35320 (4.00E-26) | unknown protein |
| CRO_T020527 | AT3G07320 (3.00E-177) | O-Glycosyl hydrolases family 17 protein |
| CRO_T021067 | - | - |
| CRO_T026785 | AT2G42960 (0) | Protein kinase superfamily protein |
| CRO_T026920 | AT2G05760 (0) | Xanthine/uracil permease family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000154 | Transcription_related, Transcription factor: AP2 adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc phosphoprotein phosphatase activity transporter activity Protein processing in endoplasmic reticulum | details |
| TreatCFM000954 | details | |
| TreatCFM001093 | transcription from RNA polymerase III promoter carbohydrate transport DNA-directed RNA polymerase III complex ribonucleoside binding RNA polymerase III activity RNA degradation Purine metabolism | details |
| TreatCFM001346 | Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 rRNA (uridine-N3-)-methyltransferase activity rRNA base methylation lignin catabolic process lignin biosynthetic process peptidyl-serine phosphorylation | details |
| TreatCFM001471 | carbohydrate transport transporter activity | details |
| TreatCFM001491 | lipid transporter activity plasmodesma Hedgehog signaling pathway lipid transport Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Ubiquitin_Proteasome_system, E3 adaptor: BTB transporter activity | details |
| TreatCFM001632 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc aminopeptidase activity manganese ion binding Protein processing in endoplasmic reticulum | details |
| TreatCFM001982 | starch biosynthesis chloroplast isoamylase complex amylopectin biosynthetic process response to molecule of bacterial origin root morphogenesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V isoamylase activity glycogen metabolic process Arp2/3 complex-mediated actin nucleation ATP binding activation of MAPKK activity multidimensional cell growth trichome morphogenesis Autophagy - yeast Arp2/3 protein complex MAP kinase kinase kinase activity MAPK cascade microtubule-based movement microtubule binding ATPase activity microtubule motor activity Starch and sucrose metabolism kinesin complex microtubule | details |
| TreatCFM002093 | Ubiquitin_Proteasome_system, E3 adaptor: DWD UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V PI3K-Akt signaling pathway UDP-sugars interconversion myosin heavy chain kinase activity racemase and epimerase activity, acting on carbohydrates and derivatives chaperone binding MAP kinase kinase kinase activity coenzyme binding Amino sugar and nucleotide sugar metabolism MAPK cascade activation of MAPKK activity | details |
Expression profiles
 Show details about module gene expression profiling |