TreatCFM002094's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| lytic vacuole organization | 0.003855401 | GO:0080171 |
| inosine catabolic process | 0.003855401 | GO:0006148 |
| glycine decarboxylation via glycine cleavage system | 0.005139775 | GO:0019464 |
| AP-3 adaptor complex | 0.005212381 | GO:0030123 |
| glycine cleavage complex | 0.005212381 | GO:0005960 |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.005308548 | kinase family |
| inosine nucleosidase activity | 0.006436646 | GO:0047724 |
| Golgi to vacuole transport | 0.008670167 | GO:0006896 |
| regulation of intracellular pH | 0.010015899 | GO:0051453 |
| adenine and adenosine salvage II | 0.012324528 | plantCyc |
| glycine cleavage | 0.012324528 | plantCyc |
| guanosine nucleotides degradation I | 0.012324528 | plantCyc |
| pyrimidine ribonucleosides salvage II | 0.012324528 | plantCyc |
| pyrimidine salvage pathway | 0.012324528 | plantCyc |
| adenosine nucleotides degradation I | 0.013468007 | plantCyc |
| folate transformations II | 0.013468007 | plantCyc |
| photorespiration | 0.013468007 | plantCyc |
| transferase activity, transferring alkyl or aryl (other than methyl) groups | 0.024114247 | GO:0016765 |
| UDP-glucosyltransferase activity | 0.028911451 | GO:0035251 |
| Lysosome | 0.038277249 | KEGG pathway |
| Terpenoid backbone biosynthesis | 0.038277249 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003004 | AT3G55480 (1.00E-137) | AP-3 beta|beta-subunit of adaptor protein complex 3; PAT2|protein affected traffi cking 2; WAT1|WEAK ACID TOLERANT 1 |
| CRO_T008966 | AT4G33950 (1.00E-93) | ATOST1|OPEN STOMATA 1; SNRK2-6|SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6; SNRK2.6|SNF1-RELATED PROTEIN KINASE 2.6 |
| CRO_T015974 | AT2G35120 (2.00E-58) | Single hybrid motif superfamily protein |
| CRO_T018783 | AT2G17570 (7.00E-87) | cPT1|cis-prenyltransferase 1 |
| CRO_T028488 | AT1G05620 (2.00E-128) | NSH2|nucleoside hydrolase 2; URH2|uridine-ribohydrolase 2 |
| CRO_T030703 | AT4G17720 (3.00E-91) | RNA-binding (RRM/RBD/RNP motifs) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000087 | integral component of membrane jasmonic acid biosynthesis AP-3 adaptor complex C-19 gibberellin 2-beta-dioxygenase activity aminoacyl-tRNA hydrolase activity calcium-dependent cysteine-type endopeptidase activity gibberellin catabolic process endoplasmic reticulum organization lytic vacuole organization regulation of autophagy Autophagy - animal Diterpenoid biosynthesis Lysosome Phenylalanine metabolism pre-autophagosomal structure potassium ion transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Golgi to vacuole transport mitochondrial translation regulation of intracellular pH formation of glycosidic bonds, GlycosylTransferases: GTnc Golgi organization | details |
| TreatCFM000941 | vindoline and vinblastine biosynthesis oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity polyamine transmembrane transport L-amino acid transmembrane transporter activity heme binding iron ion binding polyamine transmembrane transporter activity Cytochrome_P450, Cytochrome P450: CYP71B Transcription_related, Transcription factor: C2C2-GATA Transcription_related, Transcription factor: M-type amino acid transmembrane transport | details |
| TreatCFM001230 | vindoline and vinblastine biosynthesis xyloglucan biosynthesis Cytochrome_P450, Cytochrome P450: CYP71B formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001879 | protein import into mitochondrial outer membrane Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) mitochondrial outer membrane translocase complex intracellular signal transduction | details |
| TreatCFM001880 | SRP-dependent cotranslational protein targeting to membrane transferase activity, transferring alkyl or aryl (other than methyl) groups protein tyrosine phosphatase activity cell division Protein export Terpenoid backbone biosynthesis | details |
| TreatCFM001995 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription regulator: LIM daphnetin modification starch degradation II phosphoglucan, water dikinase activity sesaminol glucoside biosynthesis starch binding nucleotide binding flavonoid biosynthetic process flavonoid glucuronidation | details |
| TreatCFM002147 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 starch degradation II Transcription_related, Transcription regulator: LIM phosphoglucan, water dikinase activity starch binding phosphorylation | details |
| TreatCFM002150 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycosaminoglycan degradation transferase activity, transferring alkyl or aryl (other than methyl) groups Terpenoid backbone biosynthesis transferase activity, transferring acyl groups vacuole | details |
Expression profiles
 Show details about module gene expression profiling |