TreatCFM002149's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cell cycle - Caulobacter | 2.17E-05 | KEGG pathway |
| serine-type endopeptidase activity | 0.001382611 | GO:0004252 |
| proteolysis | 0.006071349 | GO:0006508 |
| response to reactive oxygen species | 0.006071349 | GO:0000302 |
| Transcription_related, Transcription regulator: SET | 0.006191018 | TF family |
| peptidyl-lysine monomethylation | 0.008091544 | GO:0018026 |
| regulation of gene expression | 0.00960374 | GO:0010468 |
| DNA recombination | 0.010104719 | GO:0006310 |
| ATP-dependent helicase activity | 0.010112188 | GO:0008026 |
| protein-lysine N-methyltransferase activity | 0.010112188 | GO:0016279 |
| RNA degradation | 0.019577886 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000163 | AT1G11960 (0) | ERD (early-responsive to dehydration stress) family protein |
| CRO_T000529 | AT1G11750 (1.00E-71) | CLPP6|CLP protease proteolytic subunit 6; NCLPP1|NUCLEAR-ENCODED CLPP 1 |
| CRO_T000755 | AT5G11640 (3.00E-18) | Thioredoxin superfamily protein |
| CRO_T005576 | AT2G18850 (2.00E-141) | SET domain-containing protein |
| CRO_T008130 | - | - |
| CRO_T021644 | AT4G17040 (1.00E-106) | CLPR4|CLP protease R subunit 4; HON5|happy on norflurazon 5 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001465 | proteolysis response to reactive oxygen species regulation of gene expression methylated histone binding AMPK signaling pathway Cell cycle - Caulobacter translational elongation Transcription_related, Transcription regulator: TRAF Ubiquitin_Proteasome_system, E3 adaptor: BTB ATP-dependent peptidase activity translation elongation factor activity | details |
| TreatCFM001590 | long-chain fatty acid-CoA ligase activity condensed chromosome chromosome condensation long-chain fatty acid metabolic process mitotic nuclear division Cell cycle - yeast Fatty acid metabolism cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
| TreatCFM001846 | catalytic complex intracellular non-membrane-bounded organelle nuclear lumen 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity protein-lysine N-methyltransferase activity fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) developmental process involved in reproduction stearate biosynthesis II (bacteria and plants) peptidyl-lysine monomethylation palmitate biosynthesis II (bacteria and plants) Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SET Transcription_related, Transcription factor: C2H2 | details |
| TreatCFM002122 | proteolysis serine-type endopeptidase activity gamma-glutamyl-peptidase activity folate polyglutamylation II glutamate removal from folates glutathione peroxidase activity tetrahydrofolylpolyglutamate metabolic process protein-lysine N-methyltransferase activity glutathione-peroxide redox reactions reactive oxygen species degradation Arachidonic acid metabolism Cell cycle - Caulobacter Folate biosynthesis response to reactive oxygen species Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SET peptidyl-lysine monomethylation glutamine metabolic process regulation of gene expression | details |
| TreatCFM002130 | tRNA (m1A) methyltransferase complex vindoline and vinblastine biosynthesis Stilbenoid, diarylheptanoid and gingerol biosynthesis cation binding 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity protein-lysine N-methyltransferase activity ATP-dependent DNA helicase activity myricetin 3'-O-methyltransferase activity nucleobase-containing compound metabolic process alkaloid biosynthetic process peptidyl-lysine monomethylation DNA duplex unwinding aromatic compound biosynthetic process tRNA methylation Transcription_related, Transcription regulator: SET MAPK signaling pathway - plant phosphoprotein phosphatase activity protein homodimerization activity | details |
| TreatCFM002134 | Cell cycle - Caulobacter UDP-D-galacturonate biosynthesis II (from D-galacturonate) serine-type endopeptidase activity phosphate acquisition Golgi medial cisterna cis-Golgi network response to reactive oxygen species microtubule organizing center organization microtubule nucleation regulation of vesicle targeting, to, from or within Golgi proteolysis spindle assembly cytokinesis by cell plate formation mitotic nuclear division regulation of gene expression peptidyl-tyrosine dephosphorylation intra-Golgi vesicle-mediated transport phosphotransferase activity, alcohol group as acceptor SNARE interactions in vesicular transport protein tyrosine phosphatase activity SNARE binding SNAP receptor activity vesicle fusion Amino sugar and nucleotide sugar metabolism ER to Golgi vesicle-mediated transport | details |
| TreatCFM002154 | Cell cycle - Caulobacter serine-type endopeptidase activity ADP binding protein-lysine N-methyltransferase activity proteolysis response to reactive oxygen species Transcription_related, Transcription regulator: SET peptidyl-lysine monomethylation regulation of gene expression Plant-pathogen interaction defense response | details |
| TreatCFM002164 | methylated histone binding Cell cycle - Caulobacter MAPK signaling pathway peptidyl-lysine monomethylation response to reactive oxygen species regulation of gene expression protein-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET | details |
Expression profiles
 Show details about module gene expression profiling |