TreatCFM002145's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| zeaxanthin, antheraxanthin and violaxanthin interconversion | 0.002659181 | plantCyc |
| starch degradation II | 0.003720379 | plantCyc |
| phosphorylated carbohydrate dephosphorylation | 0.004048762 | GO:0046838 |
| alpha-amylase activity | 0.006435695 | GO:0004556 |
| sugar-phosphatase activity | 0.006435695 | GO:0050308 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.007971652 | cazy family |
| starch catabolic process | 0.008093936 | GO:0005983 |
| starch binding | 0.008844504 | GO:2001070 |
| protein tyrosine/serine/threonine phosphatase activity | 0.008844504 | GO:0008138 |
| Transcription_related, Transcription factor: NAC | 0.019577886 | TF family |
| chloroplast | 0.022577211 | GO:0009507 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002650 | AT4G23930 (4.00E-26) | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| CRO_T005900 | AT1G69830 (0) | AMY3|alpha-amylase-like 3 |
| CRO_T011027 | AT2G21530 (2.00E-32) | SMAD/FHA domain-containing protein |
| CRO_T017165 | AT3G10940 (2.00E-108) | LSF2|LIKE SEX4 2 |
| CRO_T021242 | AT5G09330 (8.00E-35) | ANAC082|NAC domain containing protein 82; VNI1|VND-interacting 1 |
| CRO_T029683 | AT1G30600 (0) | Subtilase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001280 | Transcription_related, Transcription factor: OFP induced systemic resistance, jasmonic acid mediated signaling pathway ionotropic glutamate receptor signaling pathway ion transport response to wounding ionotropic glutamate receptor activity | details |
| TreatCFM001303 | L-carnitine biosynthesis zeaxanthin, antheraxanthin and violaxanthin interconversion lipase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc polygalacturonase activity | details |
| TreatCFM001651 | Cytochrome_P450, Cytochrome P450: CYP706A | details |
| TreatCFM001729 | catalytic complex SWI/SNF complex intracellular non-membrane-bounded organelle nuclear lumen Transcription_related, Transcription factor: NAC developmental process involved in reproduction macromolecule metabolic process chromatin remodeling response to stimulus multicellular organism development methyltransferase activity serine-type endopeptidase activity | details |
| TreatCFM001846 | catalytic complex intracellular non-membrane-bounded organelle nuclear lumen 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity protein-lysine N-methyltransferase activity fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) developmental process involved in reproduction stearate biosynthesis II (bacteria and plants) peptidyl-lysine monomethylation palmitate biosynthesis II (bacteria and plants) Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SET Transcription_related, Transcription factor: C2H2 | details |
| TreatCFM001887 | nickel cation binding UDP-glucose 4-epimerase activity UDP-L-arabinose biosynthesis I (from UDP-xylose) zeaxanthin, antheraxanthin and violaxanthin interconversion UDP-sugars interconversion Cell cycle - yeast galactose metabolic process nitrogen compound metabolic process Amino sugar and nucleotide sugar metabolism chloroplast thylakoid membrane cellular process | details |
| TreatCFM002087 | chlorophyll a degradation II hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: G2-like Necroptosis Porphyrin and chlorophyll metabolism pheophorbide a oxygenase activity alpha-amylase activity chlorophyllide a oxygenase [overall] activity chloroplast thylakoid chloroplast defense response to bacterium, incompatible interaction fruit development cell death chlorophyll catabolic process cellular response to oxidative stress glycerol ether metabolic process flower development sulfate assimilation peptidyl-prolyl cis-trans isomerase activity aspartic-type endopeptidase activity 2 iron, 2 sulfur cluster binding oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity protein catabolic process | details |
| TreatCFM002122 | proteolysis serine-type endopeptidase activity gamma-glutamyl-peptidase activity folate polyglutamylation II glutamate removal from folates glutathione peroxidase activity tetrahydrofolylpolyglutamate metabolic process protein-lysine N-methyltransferase activity glutathione-peroxide redox reactions reactive oxygen species degradation Arachidonic acid metabolism Cell cycle - Caulobacter Folate biosynthesis response to reactive oxygen species Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SET peptidyl-lysine monomethylation glutamine metabolic process regulation of gene expression | details |
| TreatCFM002131 | glutathione-peroxide redox reactions reactive oxygen species degradation Arachidonic acid metabolism Cell cycle - yeast AMPK signaling pathway glutathione peroxidase activity Transcription_related, Transcription factor: NAC translation elongation factor activity GTPase activity cellular oxidant detoxification response to oxidative stress translational elongation cellular process | details |
Expression profiles
 Show details about module gene expression profiling |