TreatCFM002087's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chlorophyll a degradation II | 0.002067152 | plantCyc |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.008359358 | cazy family |
| Transcription_related, Transcription factor: G2-like | 0.008359358 | TF family |
| Necroptosis | 0.013602146 | KEGG pathway |
| Porphyrin and chlorophyll metabolism | 0.013602146 | KEGG pathway |
| pheophorbide a oxygenase activity | 0.01374091 | GO:0032441 |
| alpha-amylase activity | 0.01374091 | GO:0004556 |
| chlorophyllide a oxygenase [overall] activity | 0.016026798 | GO:0010277 |
| chloroplast thylakoid | 0.022113285 | GO:0009534 |
| chloroplast | 0.022113285 | GO:0009507 |
| defense response to bacterium, incompatible interaction | 0.026097271 | GO:0009816 |
| fruit development | 0.026097271 | GO:0010154 |
| cell death | 0.026097271 | GO:0008219 |
| chlorophyll catabolic process | 0.030746592 | GO:0015996 |
| cellular response to oxidative stress | 0.036288592 | GO:0034599 |
| glycerol ether metabolic process | 0.036288592 | GO:0006662 |
| flower development | 0.036288592 | GO:0009908 |
| sulfate assimilation | 0.036288592 | GO:0000103 |
| peptidyl-prolyl cis-trans isomerase activity | 0.041914001 | GO:0003755 |
| aspartic-type endopeptidase activity | 0.041914001 | GO:0004190 |
| 2 iron, 2 sulfur cluster binding | 0.041914001 | GO:0051537 |
| oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 0.041914001 | GO:0016671 |
| protein disulfide oxidoreductase activity | 0.041914001 | GO:0015035 |
| protein catabolic process | 0.045858781 | GO:0030163 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005900 | AT1G69830 (0) | AMY3|alpha-amylase-like 3 |
| CRO_T011249 | AT1G11910 (2.00E-76) | APA1|aspartic proteinase A1 |
| CRO_T014128 | - | - |
| CRO_T019218 | - | - |
| CRO_T019738 | - | - |
| CRO_T025763 | AT1G32240 (6.00E-20) | KAN2|KANADI 2 |
| CRO_T027648 | AT3G44600 (5.00E-23) | CYP71|cyclophilin 71 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000173 | hesperitin glycoside biosynthesis naringenin glycoside biosynthesis acetylglucosaminyltransferase activity high-affinity secondary active ammonium transmembrane transporter activity | details |
| TreatCFM000395 | Circadian rhythm - plant positive regulation of long-day photoperiodism, flowering temperature compensation of the circadian clock response to far red light response to blue light Circadian rhythm response to hydrogen peroxide response to cold nucleoplasm negative regulation of transcription from RNA polymerase II promoter receptor-mediated endocytosis Fluorobenzoate degradation Cytochrome_P450, Cytochrome P450: CYP75B Transcription_related, Transcription factor: NF-X1 Transcription_related, Transcription regulator: Pseudo ARR-B transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding scavenger receptor activity | details |
| TreatCFM000650 | protein ubiquitination acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001109 | uroporphyrinogen-III synthase activity tetrapyrrole biosynthetic process phospholipases Inositol phosphate metabolism | details |
| TreatCFM001540 | ascorbate glutathione cycle lipoate synthase activity glutathione dehydrogenase (ascorbate) activity Ascorbate and aldarate metabolism Proteasome protein glutathionylation protein lipoylation fatty acid beta-oxidation using acyl-CoA dehydrogenase lipid homeostasis shoot system development lipoate biosynthetic process acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor fatty-acyl-CoA binding threonine-type endopeptidase activity | details |
| TreatCFM001644 | Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) Transcription_related, Transcription factor: G2-like preribosome, large subunit precursor small ribosomal subunit | details |
| TreatCFM001950 | small ribosomal subunit heat shock protein binding | details |
| TreatCFM002116 | phosphatidylethanolamine biosynthesis I phosphatidylserine decarboxylase activity Valine, leucine and isoleucine degradation L-valine degradation I Glycerophospholipid metabolism anion transport phospholipid biosynthetic process transmembrane transporter activity aspartic-type endopeptidase activity protein catabolic process single-organism metabolic process | details |
| TreatCFM002117 | Hedgehog signaling pathway Valine, leucine and isoleucine degradation L-valine degradation I Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Ubiquitin_Proteasome_system, E3 adaptor: BTB cellular developmental process endoplasmic reticulum membrane aspartic-type endopeptidase activity peptidyl-prolyl cis-trans isomerase activity FK506 binding embryo development root development organic substance metabolic process chaperone-mediated protein folding post-embryonic development primary metabolic process protein catabolic process cellular metabolic process single-organism metabolic process lipid metabolic process | details |
| TreatCFM002145 | zeaxanthin, antheraxanthin and violaxanthin interconversion starch degradation II phosphorylated carbohydrate dephosphorylation alpha-amylase activity sugar-phosphatase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc starch catabolic process starch binding protein tyrosine/serine/threonine phosphatase activity Transcription_related, Transcription factor: NAC chloroplast | details |
Expression profiles
 Show details about module gene expression profiling |