|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | metabolic process, | 1.27E-05 | GO:0008152 | | transferase activity, transferring hexosyl groups, | 0.0002304 | GO:0016758 | | cysteine metabolic process, | 0.011625506 | GO:0006534 | | phenylalanyl-tRNA aminoacylation, | 0.011625506 | GO:0006432 | | cysteine desulfurase activity, | 0.042778433 | GO:0031071 | | phenylalanine-tRNA ligase activity, | 0.042778433 | GO:0004826 |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000102 | trehalose biosynthetic process,
| details | | CFinderM000466 | | details | | CFinderM000835 | phenylalanyl-tRNA aminoacylation,
aminoacyl-tRNA ligase activity,
phenylalanine-tRNA ligase activity,
tRNA binding,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
nucleotide binding,
magnesium ion binding,
cytoplasm,
GeBP Transcription_Regulator(from PlantTFDB)
RNA binding,
tRNA aminoacylation for protein translation,
ATP binding,
| details | | CFinderM000848 | GT66 GlycosylTransferases
phenylalanyl-tRNA aminoacylation,
tRNA aminoacylation,
oligosaccharyl transferase activity,
phenylalanine-tRNA ligase activity,
tRNA binding,
protein glycosylation,
Various_types_of_N-glycan_biosynthesis
Aminoacyl-tRNA_biosynthesis
N-Glycan_biosynthesis
| details | | CFinderM000875 | membrane,
cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
acetylglucosaminyltransferase activity,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
| details | | CFinderM000941 | defense_response_signaling_pathway,_resistance_gene-dependent
phenylalanyl-tRNA aminoacylation,
defense response to bacterium,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
phenylalanine-tRNA ligase activity,
tRNA binding,
| details | | CFinderM001321 | GT66 GlycosylTransferases
peroxisome_fission
phenylalanyl-tRNA aminoacylation,
integral_component_of_peroxisomal_membrane
SAGA-type_complex
tRNA aminoacylation,
oligosaccharyl transferase activity,
phenylalanine-tRNA ligase activity,
| details | | CFinderM001495 | integral to Golgi membrane,
intra-Golgi vesicle-mediated transport,
cysteine metabolic process,
STE_STE11 (from iTAK)
Sulfur_relay_system
Thiamine_metabolism
cysteine desulfurase activity,
| details | | CFinderM001496 | Sulfur_relay_system
Thiamine_metabolism
COPI vesicle coat,
clathrin adaptor complex,
cysteine desulfurase activity,
cysteine metabolic process,
retrograde vesicle-mediated transport, Golgi to ER,
| details | | CFinderM001647 | phenylalanyl-tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
tRNA binding,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
aminoacyl-tRNA ligase activity,
fumarate metabolic process,
nucleotide binding,
magnesium ion binding,
tricarboxylic acid cycle enzyme complex,
fumarate hydratase activity,
cytoplasm,
mitochondrial outer membrane,
RNA binding,
tricarboxylic acid cycle,
Carbon_fixation_pathways_in_prokaryotes
Citrate_cycle_(TCA_cycle)
lyase activity,
| details | | CFinderM001663 | DNA polymerase III complex,
GRAS Transcription_Regulator(from PlantTFDB)
DNA_replication
DNA-directed DNA polymerase activity,
| details | | CFinderM001696 | phenylalanyl-tRNA aminoacylation,
microtubule,
mitochondrial outer membrane,
protein complex,
Fatty_acid_metabolism
Peroxisome
Aminoacyl-tRNA_biosynthesis
phenylalanine-tRNA ligase activity,
tRNA aminoacylation,
protein polymerization,
microtubule-based process,
tRNA binding,
| details | | CFinderM001747 | NAK (from iTAK)
Sulfur_relay_system
Thiamine_metabolism
Golgi apparatus,
cysteine metabolic process,
membrane coat,
clathrin adaptor complex,
cysteine desulfurase activity,
regulation of ARF protein signal transduction,
cytoskeleton organization,
ARF guanyl-nucleotide exchange factor activity,
| details | | CFinderM001793 | cysteine desulfurase activity,
cysteine metabolic process,
6-phosphofructokinase complex,
fructose_6-phosphate_metabolic_process
Sulfur_relay_system
Thiamine_metabolism
6-phosphofructokinase activity,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
Galactose_metabolism
Fructose_and_mannose_metabolism
Pentose_phosphate_pathway
| details | | CFinderM001825 | GT66 GlycosylTransferases
cation:chloride_symporter_activity
oligosaccharyl transferase activity,
spindle pole,
microtubule organizing center,
microtubule cytoskeleton organization,
ion transport,
| details | | CFinderM001860 | Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
Protein_processing_in_endoplasmic_reticulum
dolichyl-diphosphooligosaccharide-protein glycotransferase activity,
GT66 GlycosylTransferases
protein glycosylation,
protein N-linked glycosylation via asparagine,
phenylalanyl-tRNA aminoacylation,
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
oligosaccharyl transferase activity,
tRNA binding,
ER_membrane_protein_complex
Aminoacyl-tRNA_biosynthesis
endoplasmic reticulum membrane,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
| details | | CFinderM001881 | cysteine metabolic process,
Sulfur_relay_system
Thiamine_metabolism
cysteine desulfurase activity,
microtubule associated complex,
microtubule-based movement,
| details | | CFinderM001894 | AGC_NDR (from iTAK)
Golgi apparatus,
membrane coat,
clathrin adaptor complex,
nucleic acid binding,
| details | | CFinderM001895 | phenylalanyl-tRNA aminoacylation,
mitochondrial outer membrane,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
tRNA binding,
| details |
4.Expression profilings |
