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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | phenylalanyl-tRNA aminoacylation, | 4.68E-06 | GO:0006432 | | phenylalanine-tRNA ligase activity, | 1.36E-05 | GO:0004826 | | tRNA binding, | 5.31E-05 | GO:0000049 | | tRNA aminoacylation, | 7.59E-05 | GO:0043039 | | Aminoacyl-tRNA_biosynthesis | 0.000397042 | KEGG | | aminoacyl-tRNA ligase activity, | 0.001284936 | GO:0004812 | | fumarate metabolic process, | 0.002497396 | GO:0006106 | | nucleotide binding, | 0.003072609 | GO:0000166 | | magnesium ion binding, | 0.003072609 | GO:0000287 | | tricarboxylic acid cycle enzyme complex, | 0.003609375 | GO:0045239 | | fumarate hydratase activity, | 0.00363329 | GO:0004333 | | cytoplasm, | 0.00600886 | GO:0005737 | | mitochondrial outer membrane, | 0.00600886 | GO:0005741 | | RNA binding, | 0.014542956 | GO:0003723 | | tricarboxylic acid cycle, | 0.016198103 | GO:0006099 | | Carbon_fixation_pathways_in_prokaryotes | 0.016804313 | KEGG | | Citrate_cycle_(TCA_cycle) | 0.021950026 | KEGG | | lyase activity, | 0.028084171 | GO:0016829 |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000139 | metabolic process,
transferase activity, transferring hexosyl groups,
cysteine metabolic process,
phenylalanyl-tRNA aminoacylation,
cysteine desulfurase activity,
phenylalanine-tRNA ligase activity,
| details | | CFinderM000365 | microtubule-based movement,
microtubule associated complex,
microtubule motor activity,
regulation of Rab GTPase activity,
Rab GTPase activator activity,
| details | | CFinderM000835 | phenylalanyl-tRNA aminoacylation,
aminoacyl-tRNA ligase activity,
phenylalanine-tRNA ligase activity,
tRNA binding,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
nucleotide binding,
magnesium ion binding,
cytoplasm,
GeBP Transcription_Regulator(from PlantTFDB)
RNA binding,
tRNA aminoacylation for protein translation,
ATP binding,
| details | | CFinderM000848 | GT66 GlycosylTransferases
phenylalanyl-tRNA aminoacylation,
tRNA aminoacylation,
oligosaccharyl transferase activity,
phenylalanine-tRNA ligase activity,
tRNA binding,
protein glycosylation,
Various_types_of_N-glycan_biosynthesis
Aminoacyl-tRNA_biosynthesis
N-Glycan_biosynthesis
| details | | CFinderM000941 | defense_response_signaling_pathway,_resistance_gene-dependent
phenylalanyl-tRNA aminoacylation,
defense response to bacterium,
tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
phenylalanine-tRNA ligase activity,
tRNA binding,
| details | | CFinderM001318 | RLK-Pelle_RLCK-XI (from iTAK)
GT4 GlycosylTransferases
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
Rab GDP-dissociation inhibitor activity,
GPI anchor biosynthetic process,
| details | | CFinderM001321 | GT66 GlycosylTransferases
peroxisome_fission
phenylalanyl-tRNA aminoacylation,
integral_component_of_peroxisomal_membrane
SAGA-type_complex
tRNA aminoacylation,
oligosaccharyl transferase activity,
phenylalanine-tRNA ligase activity,
| details | | CFinderM001673 | HAUS_complex
RLK-Pelle_LRR-V (from iTAK)
STE_STE11 (from iTAK)
spindle_assembly
zinc_ion_transmembrane_transport
| details | | CFinderM001684 | heme_a_biosynthetic_process
peroxisomal membrane,
mitochondrial outer membrane,
protein_import_into_peroxisome_matrix
negative_regulation_of_transcription,_DNA-templated
transcription_corepressor_activity
| details | | CFinderM001696 | phenylalanyl-tRNA aminoacylation,
microtubule,
mitochondrial outer membrane,
protein complex,
Fatty_acid_metabolism
Peroxisome
Aminoacyl-tRNA_biosynthesis
phenylalanine-tRNA ligase activity,
tRNA aminoacylation,
protein polymerization,
microtubule-based process,
tRNA binding,
| details | | CFinderM001759 | Citrate_cycle_(TCA_cycle)
tricarboxylic acid cycle enzyme complex,
phenylalanyl-tRNA aminoacylation,
fumarate metabolic process,
tricarboxylic acid cycle,
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
fumarate hydratase activity,
tRNA binding,
Carbon_fixation_pathways_in_prokaryotes
Aminoacyl-tRNA_biosynthesis
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
| details | | CFinderM001775 | myosin complex,
TBP-class_protein_binding
Fructose_and_mannose_metabolism
Basal_transcription_factors
Amino_sugar_and_nucleotide_sugar_metabolism
motor activity,
| details | | CFinderM001860 | Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
Protein_processing_in_endoplasmic_reticulum
dolichyl-diphosphooligosaccharide-protein glycotransferase activity,
GT66 GlycosylTransferases
protein glycosylation,
protein N-linked glycosylation via asparagine,
phenylalanyl-tRNA aminoacylation,
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
oligosaccharyl transferase activity,
tRNA binding,
ER_membrane_protein_complex
Aminoacyl-tRNA_biosynthesis
endoplasmic reticulum membrane,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
| details | | CFinderM001892 | phenylalanyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
WRKY Transcription_Regulator(from PlantTFDB)
tRNA binding,
| details | | CFinderM001894 | AGC_NDR (from iTAK)
Golgi apparatus,
membrane coat,
clathrin adaptor complex,
nucleic acid binding,
| details | | CFinderM001895 | phenylalanyl-tRNA aminoacylation,
mitochondrial outer membrane,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
tRNA binding,
| details |
4.Expression profilings |
