|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | protein binding, | 0.011854366 | GO:0005515 | | acid-amino acid ligase activity, | 0.025737864 | GO:0016881 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000176G1170 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT1G08070 (2.00E-146) | | PH01000181G1330 | ubiquitin-conjugating enzyme 32 | AT3G17000 (7.90E-92) | | PH01000514G0680 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT5G26180 (3.90E-58) | | PH01000547G0050 | Pentatricopeptide repeat (PPR) superfamily protein | AT3G49710 (0.00E+00) | | PH01001627G0410 | Pentatricopeptide repeat (PPR) superfamily protein | AT5G52850 (3.00E-126) | | PH01002740G0130 | - | - (-) | | PH01047944G0010 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT1G53600 (2.00E-124) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000408 | Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
| details | | CFinderM000587 | protein binding,
acid-amino acid ligase activity,
| details | | CFinderM000691 | ornithine carbamoyltransferase activity,
phosphoribosyl-AMP cyclohydrolase activity,
ornithine_metabolic_process
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
histone deacetylation,
Histidine_metabolism
histidine biosynthetic process,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
cellular protein metabolic process,
amino acid binding,
| details | | CFinderM000717 | tRNA processing,
| details | | CFinderM000940 | nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM001039 | acetyl-CoA carboxylase activity,
biotin_carboxylase_activity
Fatty_acid_biosynthesis
Propanoate_metabolism
Pyruvate_metabolism
cytokinesis
microtubule cytoskeleton organization,
ligase activity,
microtubule binding,
| details | | CFinderM001079 | SOS_response
DNA metabolic process,
cellular protein metabolic process,
| details | | CFinderM001110 | Ubiquitin_mediated_proteolysis
acid-amino acid ligase activity,
protein neddylation,
cellular protein modification process,
small protein activating enzyme activity,
| details | | CFinderM001131 | | details | | CFinderM001414 | PHD Transcription_Regulator(from iTAK)
| details | | CFinderM001415 | PHD Transcription_Regulator(from iTAK)
| details | | CFinderM001452 | 'de novo' IMP biosynthetic process,
5-(carboxyamino)imidazole_ribonucleotide_mutase_activity
| details | | CFinderM001510 | Ribosome_biogenesis_in_eukaryotes
RNA processing,
acid-amino acid ligase activity,
| details | | CFinderM001516 | Ribosome_biogenesis_in_eukaryotes
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001517 | N-acetyl-gamma-glutamyl-phosphate reductase activity,
cellular amino acid biosynthetic process,
cellular amino acid metabolic process,
| details | | CFinderM001519 | | details | | CFinderM001718 | phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
| details | | CFinderM001761 | large ribosomal subunit,
intracellular,
| details | | CFinderM001773 | Group-Pl-3 (from iTAK)
phosphoribosylformylglycinamidine cyclo-ligase activity,
'de novo' IMP biosynthetic process,
intracellular,
| details | | CFinderM001848 | Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
SBP Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Butanoate_metabolism
branched chain family amino acid biosynthetic process,
acetolactate synthase activity,
| details | | CFinderM001882 | Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
branched chain family amino acid biosynthetic process,
SBP Transcription_Regulator(from PlantTFDB)
Butanoate_metabolism
Pantothenate_and_CoA_biosynthesis
acetolactate synthase activity,
| details |
4.Expression profilings |
