CFinderM000826's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
dihydrodipicolinate synthase activity,8.36E-06GO:0008840
Lysine_biosynthesis2.80E-05KEGG
lysine biosynthetic process via diaminopimelate,3.55E-05GO:0009089
spliceosomal complex,0.000115037GO:0005681
nuclear mRNA splicing, via spliceosome,0.000127365GO:0000398
lyase activity,0.000344136GO:0016829
GT48 GlycosylTransferases0.005996344GFam
C3H Transcription_Regulator(from PlantTFDB)0.026795391GFam
rRNA binding,0.04235304GO:0019843

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000057G1220Zinc finger C-x8-C-x5-C-x3-H type family proteinAT1G19860 (5.00E-71)
PH01000249G0140dihydrodipicolinate synthaseAT2G45440 (9.00E-133)
PH01000364G0200dihydrodipicolinate synthaseAT2G45440 (1.00E-135)
PH01000390G0850early-responsive to dehydration stress protein (ERD4)AT4G35870 (0.00E+00)
PH01001314G0520DNA-binding bromodomain-containing proteinAT5G55040 (4.60E-46)
PH01002010G0080glucan synthase-like 12AT5G13000 (2.00E-134)
PH01002164G0040-- (-)
PH01002620G0300Ribosomal protein L20AT1G16740 (2.80E-54)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000300nuclear mRNA splicing, via spliceosome,
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
Lysine_biosynthesis
spliceosomal complex,
lyase activity,
snRNA_binding
rRNA binding,
metabolic process,
details
CFinderM000985nuclear mRNA splicing, via spliceosome,
RLK-Pelle_RLCK-XII-1 (from iTAK)
spliceosomal complex,
cis-Golgi network,
Golgi membrane,
lysine biosynthetic process via diaminopimelate,
ER to Golgi vesicle-mediated transport,
dihydrodipicolinate synthase activity,
snRNA_binding
SNARE_interactions_in_vesicular_transport
Lysine_biosynthesis
protein binding,
lyase activity,
details
CFinderM001134Lysine_biosynthesis
regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
spliceosomal complex,
Ribosome
details
CFinderM001209Lysine_biosynthesis
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
details
CFinderM001269regulation of translational initiation,
'de novo' IMP biosynthetic process,
autophagy,
phosphoribosylformylglycinamidine cyclo-ligase activity,
eukaryotic translation initiation factor 3 complex,
cytoplasm,
ribosome binding,
details
CFinderM001345C3H Transcription_Regulator(from PlantTFDB)
1,3-beta-D-glucan synthase complex,
catalase activity,
membrane,
(1->3)-beta-D-glucan biosynthetic process,
Tryptophan_metabolism
Glyoxylate_and_dicarboxylate_metabolism
Peroxisome
RNA-dependent DNA replication,
Methane_metabolism
details
CFinderM001428nuclear mRNA splicing, via spliceosome,
spliceosomal complex,
cell volume homeostasis,
COPII_vesicle_coating
lysine biosynthetic process via diaminopimelate,
chloride transport,
dihydrodipicolinate synthase activity,
snRNA_binding
Lysine_biosynthesis
details
CFinderM001749phosphoribosylformylglycinamidine cyclo-ligase activity,
autophagy,
'de novo' IMP biosynthetic process,
cellular protein metabolic process,
details

4.Expression profilings