CFinderM001525's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
MYB-related Transcription_Regulator(from iTAK)0.030690945GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000142G0470galacturonosyltransferase 9AT3G02350 (9.00E-100)
PH01000394G0450Telomerase activating protein Est1AT5G19400 (4.00E-176)
PH01000668G0460histone mono-ubiquitination 1AT2G44950 (2.00E-171)
PH01000916G0610-AT3G03560 (4.00E-104)
PH01001226G0090-- (-)
PH01001269G0020Ras-related small GTP-binding family proteinAT3G62560 (6.00E-90)
PH01001650G0140Protein of unknown function (DUF1195)AT5G65650 (5.20E-27)
PH01001661G0060Homeodomain-like superfamily proteinAT4G39160 (3.80E-36)
PH01002064G0120embryo defective 2423AT3G48470 (9.00E-174)
PH01004547G0060IAP-like protein 1AT1G17210 (0.00E+00)
PH01004724G0070Ankyrin repeat family protein with DHHC zinc finger domainAT5G20350 (0.00E+00)
PH01005639G0020DNA-directed RNA polymerase family proteinAT4G21710 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000729positive_regulation_of_transcription,_DNA-templated
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
TKL_CTR1-DRK-2 (from iTAK)
mRNA_surveillance_pathway
details
CFinderM000732SNF2 Transcription_Regulator(from iTAK)
transferase activity, transferring pentosyl groups,
mRNA_surveillance_pathway
details
CFinderM000810CAMTA Transcription_Regulator(from PlantTFDB)
glycerol-3-phosphate dehydrogenase complex,
Valine,_leucine_and_isoleucine_degradation
details
CFinderM000814DDT Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
details
CFinderM000945Protein_processing_in_endoplasmic_reticulum
details
CFinderM000970Protein_processing_in_endoplasmic_reticulum
C3H Transcription_Regulator(from PlantTFDB)
RNA_transport
details
CFinderM000977mRNA_surveillance_pathway
CAMTA Transcription_Regulator(from PlantTFDB)
Ubiquitin_mediated_proteolysis
defense response,
details
CFinderM001017calcium-dependent cysteine-type endopeptidase activity,
mechanically-gated_ion_channel_activity
RNA_degradation
details
CFinderM001202mediator complex,
L-arabinose metabolic process,
regulation of transcription from RNA polymerase II promoter,
alpha-N-arabinofuranosidase activity,
RNA_polymerase_II_transcription_cofactor_activity
details
CFinderM001317Ether_lipid_metabolism
Endocytosis
Glycerophospholipid_metabolism
details
CFinderM001457mRNA_surveillance_pathway
Diterpenoid_biosynthesis
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
mechanically-gated_ion_channel_activity
details
CFinderM001458mRNA_surveillance_pathway
AGC_RSK-2 (from iTAK)
SBP Transcription_Regulator(from PlantTFDB)
cell death,
details
CFinderM001546calcium-dependent cysteine-type endopeptidase activity,
mechanically-gated_ion_channel_activity
GH17 Glycoside_Hydrolases
CBM43 Carbohydrate-Binding_Modules
MYB-related Transcription_Regulator(from iTAK)
endoplasmic reticulum,
integral to membrane,
details
CFinderM001579mediator complex,
vesicle docking involved in exocytosis,
regulation of transcription from RNA polymerase II promoter,
RNA_polymerase_II_transcription_cofactor_activity
vesicle-mediated transport,
nucleotidyltransferase activity,
details
CFinderM001586mediator complex,
regulation of transcription from RNA polymerase II promoter,
transcription, DNA-dependent,
ribonucleoside_binding
RNA_polymerase_II_transcription_cofactor_activity
RNA_polymerase
details
CFinderM001729mRNA_surveillance_pathway
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
transferase activity, transferring acyl groups,
details
CFinderM001776Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
details
CFinderM001785transferase activity, transferring pentosyl groups,
Nicotinate_and_nicotinamide_metabolism
Diterpenoid_biosynthesis
details
CFinderM001797proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
mediator complex,
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
MYB-related Transcription_Regulator(from iTAK)
RNA_polymerase_II_transcription_cofactor_activity
hydrogen ion transmembrane transporter activity,
Phagosome
Oxidative_phosphorylation
details
CFinderM001819SNF2 Transcription_Regulator(from iTAK)
cis-Golgi network,
mRNA_surveillance_pathway
details
CFinderM001820mediator complex,
CBM43 Carbohydrate-Binding_Modules
GH17 Glycoside_Hydrolases
details
CFinderM001849SNF2 Transcription_Regulator(from iTAK)
mediator complex,
regulation of transcription from RNA polymerase II promoter,
details
CFinderM001879cis-Golgi network,
details

4.Expression profilings


Show details about module gene expression profiling