CFinderM001568's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
FAR1 Transcription_Regulator(from PlantTFDB)0.009267349GFam
RLK-Pelle_LRR-XV (from iTAK)0.009267349GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000008G2470-- (-)
PH01000133G1570TOPLESS-related 2AT3G16830 (0.00E+00)
PH01000180G0820RING domain ligase2AT5G14420 (5.00E-119)
PH01000308G0850FAR1-related sequence 7AT3G06250 (5.30E-38)
PH01000678G0560Protein of unknown function (DUF1336)AT1G59650 (2.00E-134)
PH01000716G0350receptor-like protein kinase 2AT3G02130 (0.00E+00)
PH01000780G0200ribosomal protein L23ABAT3G55280 (2.00E-46)
PH01000840G0410zinc finger (CCCH-type/C3HC4-type RING finger) family proteinAT3G08505 (1.00E-128)
PH01001235G0180RNA binding (RRM/RBD/RNP motifs) family proteinAT5G60170 (2.00E-108)
PH01001627G0500-- (-)
PH01001649G0250prohibitin 2AT1G03860 (8.00E-122)
PH01001914G0200-- (-)
PH01004502G0120Galactose oxidase/kelch repeat superfamily proteinAT1G22040 (4.00E-153)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000117nuclear chromosome,
Glycolysis_/_Gluconeogenesis
Ino80_complex
ATP citrate synthase activity,
phosphoglycerate kinase activity,
succinate-CoA ligase (ADP-forming) activity,
details
CFinderM000967TKL-Pl-1 (from iTAK)
GH17 Glycoside_Hydrolases
phosphate-containing compound metabolic process,
phospholipid transport,
magnesium ion binding,
details
CFinderM001106Endocytosis
details
CFinderM001108RLK-Pelle_LRR-XV (from iTAK)
GT77 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
details
CFinderM001149ketol-acid reductoisomerase activity,
branched chain family amino acid biosynthetic process,
cellular amino acid biosynthetic process,
SCY1_SCYL2 (from iTAK)
coenzyme binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
Endocytosis
details
CFinderM001174arsenite transmembrane transporter activity,
arsenite_transport
DNA photolyase activity,
details
CFinderM001206Riboflavin_metabolism
riboflavin kinase activity,
riboflavin biosynthetic process,
bZIP Transcription_Regulator(from PlantTFDB)
nucleosome assembly,
details
CFinderM001212SCY1_SCYL2 (from iTAK)
Ribosome
translation,
structural constituent of ribosome,
details
CFinderM001271RLK-Pelle_LysM (from iTAK)
details
CFinderM001409Whirly Transcription_Regulator(from PlantTFDB)
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
phosphatidylinositol N-acetylglucosaminyltransferase activity,
GPI anchor biosynthetic process,
details
CFinderM001469FAR1 Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
RNA_degradation
membrane,
details
CFinderM001529Fanconi_anaemia_nuclear_complex
DNA repair,
Ubiquitin_mediated_proteolysis
details
CFinderM001597Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
C3H Transcription_Regulator(from PlantTFDB)
membrane,
details
CFinderM001631Pseudo ARR-B Transcription_Regulator(from iTAK)
transaminase activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
inorganic diphosphatase activity,
hydrogen-translocating pyrophosphatase activity,
peptidyl-prolyl cis-trans isomerase activity,
two-component response regulator activity,
details
CFinderM001632translation,
Ribosome
structural constituent of ribosome,
intracellular,
Ribosome
HSF Transcription_Regulator(from PlantTFDB)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
large ribosomal subunit,
details
CFinderM001657Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
phosphatidylinositol metabolic process,
Phagosome
cellular protein metabolic process,
phosphatidylinositol phosphate kinase activity,
aspartic-type endopeptidase activity,
GH35 Glycoside_Hydrolases
phospholipid transport,
proteolysis,
metal ion binding,
details
CFinderM001689Ribosome
translation,
Jumonji Transcription_Regulator(from iTAK)
structural constituent of ribosome,
Ribosome
small ribosomal subunit,
intracellular,
details
CFinderM001708Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
branched chain family amino acid metabolic process,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
details
CFinderM001720RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
details
CFinderM001753Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
details
CFinderM001761large ribosomal subunit,
intracellular,
details
CFinderM001781RLK-Pelle_LRR-XV (from iTAK)
RNA_degradation
copper ion transport,
C3H Transcription_Regulator(from PlantTFDB)
copper-transporting_ATPase_activity
protein binding,
details
CFinderM001783RLK-Pelle_LRR-XV (from iTAK)
RNA_degradation
zinc ion binding,
details
CFinderM001801GH17 Glycoside_Hydrolases
phospholipid transport,
phosphatidylinositol metabolic process,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
RNA_degradation
Arginine_and_proline_metabolism
Phagosome
details
CFinderM001808protein binding,
Peroxisome
RNA_degradation
Endocytosis
details
CFinderM001835MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
nuclear chromosome,
chromatin binding,
details

4.Expression profilings


Show details about module gene expression profiling