CFinderM001310's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
mRNA_surveillance_pathway0.021928485KEGG
binding,0.048176861GO:0005488

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000081G0220-AT4G14746 (1.40E-29)
PH01000686G0090-- (-)
PH01000882G0150bindingAT1G79150 (2.00E-144)
PH01001209G0060Ataxia telangiectasia-mutated and RAD3-relatedAT5G40820 (5.20E-46)
PH01001962G0210tetratricopeptide repeat (TPR)-containing proteinAT1G80410 (0.00E+00)
PH01003492G0050A20/AN1-like zinc finger family proteinAT1G12440 (2.30E-36)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000544details
CFinderM000862DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,
details
CFinderM000938proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
details
CFinderM001055NF-YB Transcription_Regulator(from PlantTFDB)
details
CFinderM001160TLK (from iTAK)
cell_cortex

details
CFinderM001230base-excision repair,
mRNA_surveillance_pathway
DNA repair,
details
CFinderM001231cullin-RING ubiquitin ligase complex,
RNA modification,
ubiquitin-dependent protein catabolic process,
details
CFinderM001484RLK-Pelle_RLCK-VI (from iTAK)
mRNA_surveillance_pathway
details
CFinderM001702ribosome biogenesis,
nucleolus,
eukaryotic translation initiation factor 3 complex,
RNA_transport
details
CFinderM001810mitosis,
spliceosomal complex,
Spliceosome
details
CFinderM001821protein processing,
mRNA_surveillance_pathway
protein binding,
details
CFinderM001822protein processing,
PHD Transcription_Regulator(from iTAK)
details

4.Expression profilings