|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Endocytosis | 0.012840539 | KEGG | | cysteine-type endopeptidase activity, | 0.033946277 | GO:0004197 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000014G0980 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT4G33170 (6.90E-91) | | PH01000524G0460 | Methyltransferase-related protein | AT5G58375 (4.50E-18) | | PH01000936G0380 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT2G29760 (5.00E-125) | | PH01001233G0430 | metacaspase 1 | AT1G02170 (7.00E-118) | | PH01001234G0310 | Adaptin ear-binding coat-associated protein 1 NECAP-1 | AT3G58600 (5.30E-53) | | PH01001484G0450 | Ribosomal protein L4/L1 family | AT2G20060 (9.00E-102) | | PH01001596G0080 | crooked neck protein, putative / cell cycle protein, putative | AT5G41770 (0.00E+00) | | PH01002297G0180 | Pentatricopeptide repeat (PPR-like) superfamily protein | AT1G31430 (6.00E-121) | | PH01143315G0010 | APR-like 5 | AT3G03860 (2.40E-45) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000408 | Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
| details | | CFinderM000526 | Phenylpropanoid_biosynthesis
Phenylalanine_metabolism
Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
cellular metabolic process,
coenzyme binding,
Flavonoid_biosynthesis
Ubiquinone_and_other_terpenoid-quinone_biosynthesis
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB)
metabolic process,
sterol_24-C-methyltransferase_activity
Steroid_biosynthesis
protein kinase C-activating G-protein coupled receptor signaling pathway,
steroid biosynthetic process,
diacylglycerol kinase activity,
NAD+ kinase activity,
| details | | CFinderM000745 | GMP synthase (glutamine-hydrolyzing) activity,
pyrophosphatase_activity
CMGC_GSK (from iTAK)
protein-arginine_deiminase_activity
| details | | CFinderM000816 | CMGC_CDK-CRK7-CDK9 (from iTAK)
| details | | CFinderM000925 | Ribosome
translation,
fructose_6-phosphate_metabolic_process
Fructose_and_mannose_metabolism
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
structural constituent of ribosome,
large ribosomal subunit,
6-phosphofructokinase complex,
6-phosphofructokinase activity,
| details | | CFinderM001095 | protein binding,
RLK-Pelle_LRR-VI-2 (from iTAK)
Spliceosome
RNA processing,
| details | | CFinderM001098 | intracellular,
Spliceosome
| details | | CFinderM001156 | single-stranded DNA binding,
DNA_replication
| details | | CFinderM001197 | Ribosome
translation,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
L-ascorbic acid binding,
structural constituent of ribosome,
Arginine_and_proline_metabolism
| details | | CFinderM001212 | SCY1_SCYL2 (from iTAK)
Ribosome
translation,
structural constituent of ribosome,
| details | | CFinderM001273 | | details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001753 | Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
| details | | CFinderM001754 | Endocytosis
proton-transporting V-type ATPase, V0 domain,
cysteine-type endopeptidase activity,
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
Oxidative_phosphorylation
Phagosome
| details | | CFinderM001852 | calcium-dependent phospholipid binding,
single-stranded DNA binding,
DNA_replication
| details |
4.Expression profilings |
