|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Ribosome | 0.005457885 | KEGG | | translation, | 0.012142566 | GO:0006412 | | fructose_6-phosphate_metabolic_process | 0.012142566 | GO:0006002 | | Fructose_and_mannose_metabolism | 0.018283928 | KEGG | | GARP-G2-like Transcription_Regulator(from iTAK) | 0.023472685 | GFam | | G2-like Transcription_Regulator(from PlantTFDB) | 0.023472685 | GFam | | diphosphate-fructose-6-phosphate 1-phosphotransferase activity, | 0.033407787 | GO:0047334 | | structural constituent of ribosome, | 0.037099009 | GO:0003735 | | large ribosomal subunit, | 0.041091287 | GO:0015934 | | 6-phosphofructokinase complex, | 0.041091287 | GO:0005945 | | 6-phosphofructokinase activity, | 0.048165287 | GO:0003872 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000552G0650 | - | AT1G03290 (7.90E-34) | | PH01001087G0150 | Phosphofructokinase family protein | AT1G76550 (0.00E+00) | | PH01001239G0400 | Ribosomal protein L1p/L10e family | AT5G22440 (6.10E-92) | | PH01001461G0110 | Class I glutamine amidotransferase-like superfamily protein | AT1G53280 (5.30E-99) | | PH01001484G0450 | Ribosomal protein L4/L1 family | AT2G20060 (9.00E-102) | | PH01001536G0490 | myb-like HTH transcriptional regulator family protein | AT2G01060 (4.60E-43) | | PH01002620G0190 | respiratory burst oxidase protein F | AT1G64060 (0) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000475 | TKL-Pl-6 (from iTAK)
carbohydrate phosphorylation,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
galactokinase activity,
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
fructose_6-phosphate_metabolic_process
galactose metabolic process,
Fructose_and_mannose_metabolism
Galactose_metabolism
ATP binding,
6-phosphofructokinase activity,
kinase activity,
| details | | CFinderM000526 | Phenylpropanoid_biosynthesis
Phenylalanine_metabolism
Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
cellular metabolic process,
coenzyme binding,
Flavonoid_biosynthesis
Ubiquinone_and_other_terpenoid-quinone_biosynthesis
| details | | CFinderM000589 | TKL-Pl-1 (from iTAK)
TKL-Pl-6 (from iTAK)
Fructose_and_mannose_metabolism
6-phosphofructokinase complex,
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
cysteine-type endopeptidase activity,
6-phosphofructokinase activity,
protein kinase activity,
ATP binding,
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
fructose_6-phosphate_metabolic_process
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB)
metabolic process,
sterol_24-C-methyltransferase_activity
Steroid_biosynthesis
protein kinase C-activating G-protein coupled receptor signaling pathway,
steroid biosynthetic process,
diacylglycerol kinase activity,
NAD+ kinase activity,
| details | | CFinderM000816 | CMGC_CDK-CRK7-CDK9 (from iTAK)
| details | | CFinderM001156 | single-stranded DNA binding,
DNA_replication
| details | | CFinderM001197 | Ribosome
translation,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
L-ascorbic acid binding,
structural constituent of ribosome,
Arginine_and_proline_metabolism
| details | | CFinderM001212 | SCY1_SCYL2 (from iTAK)
Ribosome
translation,
structural constituent of ribosome,
| details | | CFinderM001250 | Endocytosis
cysteine-type endopeptidase activity,
| details | | CFinderM001273 | | details | | CFinderM001683 | Steroid_biosynthesis
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
sterol_24-C-methyltransferase_activity
protein serine/threonine kinase activity,
protein phosphorylation,
steroid biosynthetic process,
single-stranded DNA binding,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
TKL-Pl-4 (from iTAK)
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001722 | GTP_catabolic_process
small GTPase mediated signal transduction,
protein transport,
signal transduction,
GTPase activity,
GTP binding,
large ribosomal subunit,
intracellular,
membrane,
nucleocytoplasmic transport,
| details | | CFinderM001753 | Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
| details | | CFinderM001761 | large ribosomal subunit,
intracellular,
| details | | CFinderM001852 | calcium-dependent phospholipid binding,
single-stranded DNA binding,
DNA_replication
| details |
4.Expression profilings |
