|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | transcription factor TFIIF complex, | 0.004124935 | GO:0005674 | | transcription initiation from RNA polymerase II promoter, | 0.02185757 | GO:0006367 | | Basal_transcription_factors | 0.025789819 | KEGG | | Endocytosis | 0.027083322 | KEGG | | protein catabolic process, | 0.028054322 | GO:0030163 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000402G0010 | Transcription initiation factor IIF, beta subunit | AT3G52270 (1.60E-66) | | PH01001028G0610 | FTSH protease 4 | AT2G26140 (0.00E+00) | | PH01001487G0250 | Cysteine proteinases superfamily protein | AT5G04250 (3.20E-76) | | PH01001763G0240 | - | AT2G39950 (1.40E-65) | | PH01002107G0110 | zinc induced facilitator-like 1 | AT5G13750 (2.00E-102) | | PH01002302G0280 | Endosomal targeting BRO1-like domain-containing protein | AT1G15130 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000800 | cation:chloride_symporter_activity
SBP Transcription_Regulator(from PlantTFDB)
ion transport,
Endocytosis
| details | | CFinderM001082 | IWS1 Transcription_Regulator(from iTAK)
protein catabolic process,
| details | | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
| details | | CFinderM001361 | transcription factor TFIIF complex,
protein_oligomerization
cell communication,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
phosphatidylinositol binding,
chaperone binding,
bHLH Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001405 | transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
Oxidative_phosphorylation
protein catabolic process,
| details | | CFinderM001494 | GRAS Transcription_Regulator(from PlantTFDB)
protein catabolic process,
| details | | CFinderM001655 | transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
| details | | CFinderM001721 | STE_STE11 (from iTAK)
outer membrane,
Endocytosis
| details | | CFinderM001788 | protein folding,
protein catabolic process,
| details | | CFinderM001816 | transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,
| details | | CFinderM001840 | transcription factor TFIIF complex,
STE_STE11 (from iTAK)
diphosphomevalonate decarboxylase activity,
ATP binding,
histone deacetylase activity,
histone deacetylation,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Terpenoid_backbone_biosynthesis
protein catabolic process,
isoprenoid biosynthetic process,
Endocytosis
| details | | CFinderM001866 | sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001867 | Pseudo ARR-B Transcription_Regulator(from iTAK)
Riboflavin_metabolism
GTP cyclohydrolase II activity,
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
mRNA_surveillance_pathway
riboflavin biosynthetic process,
protein catabolic process,
two-component signal transduction system (phosphorelay),
| details |
4.Expression profilings |
