CFinderM001729's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
mRNA_surveillance_pathway0.000284595KEGG
CAMTA Transcription_Regulator(from PlantTFDB)0.003934178GFam
protein binding,0.032928795GO:0005515
transferase activity, transferring acyl groups,0.047178608GO:0016746

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000394G0450Telomerase activating protein Est1AT5G19400 (4.00E-176)
PH01000668G0460histone mono-ubiquitination 1AT2G44950 (2.00E-171)
PH01000938G0190Telomerase activating protein Est1AT5G19400 (7.00E-156)
PH01000946G0030Transducin/WD40 repeat-like superfamily proteinAT3G05090 (4.00E-166)
PH01001189G0100Telomerase activating protein Est1AT5G19400 (1.20E-97)
PH01001336G01502-oxoacid dehydrogenases acyltransferase family proteinAT1G34430 (1.30E-52)
PH01002143G0030calmodulin binding;transcription regulatorsAT4G16150 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000729positive_regulation_of_transcription,_DNA-templated
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
TKL_CTR1-DRK-2 (from iTAK)
mRNA_surveillance_pathway
details
CFinderM000732SNF2 Transcription_Regulator(from iTAK)
transferase activity, transferring pentosyl groups,
mRNA_surveillance_pathway
details
CFinderM000977mRNA_surveillance_pathway
CAMTA Transcription_Regulator(from PlantTFDB)
Ubiquitin_mediated_proteolysis
defense response,
details
CFinderM001436STE_STE20-Fray (from iTAK)
CAMTA Transcription_Regulator(from PlantTFDB)
Ubiquitin_mediated_proteolysis
details
CFinderM001457mRNA_surveillance_pathway
Diterpenoid_biosynthesis
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
mechanically-gated_ion_channel_activity
details
CFinderM001458mRNA_surveillance_pathway
AGC_RSK-2 (from iTAK)
SBP Transcription_Regulator(from PlantTFDB)
cell death,
details
CFinderM001468IWS1 Transcription_Regulator(from iTAK)
Biotin_metabolism
Fatty_acid_biosynthesis
details
CFinderM001525MYB-related Transcription_Regulator(from iTAK)
details
CFinderM001546calcium-dependent cysteine-type endopeptidase activity,
mechanically-gated_ion_channel_activity
GH17 Glycoside_Hydrolases
CBM43 Carbohydrate-Binding_Modules
MYB-related Transcription_Regulator(from iTAK)
endoplasmic reticulum,
integral to membrane,
details
CFinderM001574SBP Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001611CAMTA Transcription_Regulator(from PlantTFDB)
ABC_transporters
Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
Phagosome
details
CFinderM001731Peroxisome
Fatty_acid_metabolism
details
CFinderM001785transferase activity, transferring pentosyl groups,
Nicotinate_and_nicotinamide_metabolism
Diterpenoid_biosynthesis
details
CFinderM001819SNF2 Transcription_Regulator(from iTAK)
cis-Golgi network,
mRNA_surveillance_pathway
details
CFinderM001820mediator complex,
CBM43 Carbohydrate-Binding_Modules
GH17 Glycoside_Hydrolases
details
CFinderM001837Ribosome
ribosome biogenesis,
ribonucleoprotein complex,
large ribosomal subunit,
details
CFinderM001849SNF2 Transcription_Regulator(from iTAK)
mediator complex,
regulation of transcription from RNA polymerase II promoter,
details
CFinderM001879cis-Golgi network,
details

4.Expression profilings