|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Steroid_biosynthesis | 0.005021824 | KEGG | | endodeoxyribonuclease activity, producing 5'-phosphomonoesters, | 0.010899869 | GO:0016888 | | sterol_24-C-methyltransferase_activity | 0.010899869 | GO:0003838 | | single-stranded DNA binding, | 0.037704815 | GO:0003697 | | protein tyrosine phosphatase activity, | 0.037704815 | GO:0004725 | | protein tyrosine/serine/threonine phosphatase activity, | 0.037704815 | GO:0008138 | | WRKY Transcription_Regulator(from PlantTFDB) | 0.03798265 | GFam | | dephosphorylation, | 0.040112483 | GO:0016311 | | steroid biosynthetic process, | 0.040112483 | GO:0006694 |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000433 | Ribosome_biogenesis_in_eukaryotes
ATP-dependent helicase activity,
threonine-tRNA ligase activity,
helicase activity,
| details | | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
| details | | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB)
metabolic process,
sterol_24-C-methyltransferase_activity
Steroid_biosynthesis
protein kinase C-activating G-protein coupled receptor signaling pathway,
steroid biosynthetic process,
diacylglycerol kinase activity,
NAD+ kinase activity,
| details | | CFinderM000906 | HSF Transcription_Regulator(from PlantTFDB)
protein ADP-ribosylation,
dephosphorylation,
protein methylation,
Base_excision_repair
| details | | CFinderM000959 | RLK-Pelle_PERK-1 (from iTAK)
| details | | CFinderM001156 | single-stranded DNA binding,
DNA_replication
| details | | CFinderM001198 | RLK-Pelle_RLCK-VI (from iTAK)
Oxidative_phosphorylation
| details | | CFinderM001329 | Endocytosis
selenium binding,
dephosphorylation,
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
protein dephosphorylation,
cell redox homeostasis,
| details | | CFinderM001330 | selenium binding,
dephosphorylation,
protein tyrosine/serine/threonine phosphatase activity,
protein tyrosine phosphatase activity,
Endocytosis
mRNA_surveillance_pathway
phosphatase activity,
protein dephosphorylation,
cell redox homeostasis,
| details | | CFinderM001331 | protein dephosphorylation,
microtubule organizing center,
spindle pole,
dephosphorylation,
microtubule cytoskeleton organization,
C2H2 Transcription_Regulator(from PlantTFDB)
isoprenoid biosynthetic process,
selenium binding,
| details | | CFinderM001471 | regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
WRKY Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001591 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
metabolic process,
branched chain family amino acid metabolic process,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
branched-chain-amino-acid transaminase activity,
transferase activity, transferring pentosyl groups,
steroid biosynthetic process,
histidine biosynthetic process,
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Histidine_metabolism
Steroid_biosynthesis
| details | | CFinderM001622 | Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation for protein translation,
aminoacyl-tRNA ligase activity,
cytoplasm,
threonyl-tRNA aminoacylation,
ATP binding,
tyrosine-tRNA ligase activity,
threonine-tRNA ligase activity,
tRNA aminoacylation,
protein catabolic process,
ATP-dependent peptidase activity,
ligase activity, forming aminoacyl-tRNA and related compounds,
| details | | CFinderM001682 | RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
sterol_24-C-methyltransferase_activity
steroid biosynthetic process,
single-stranded DNA binding,
| details | | CFinderM001683 | Steroid_biosynthesis
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
sterol_24-C-methyltransferase_activity
protein serine/threonine kinase activity,
protein phosphorylation,
steroid biosynthetic process,
single-stranded DNA binding,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
TKL-Pl-4 (from iTAK)
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001684 | heme_a_biosynthetic_process
peroxisomal membrane,
mitochondrial outer membrane,
protein_import_into_peroxisome_matrix
negative_regulation_of_transcription,_DNA-templated
transcription_corepressor_activity
| details | | CFinderM001699 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
sterol_24-C-methyltransferase_activity
5S rRNA binding,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
Steroid_biosynthesis
steroid biosynthetic process,
branched chain family amino acid metabolic process,
ion transport,
| details | | CFinderM001753 | Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
| details | | CFinderM001845 | protein complex,
microtubule,
PLATZ Transcription_Regulator(from iTAK)
Phagosome
mRNA_surveillance_pathway
CAMK_CAMKL-CHK1 (from iTAK)
protein polymerization,
microtubule-based process,
dephosphorylation,
| details | | CFinderM001852 | calcium-dependent phospholipid binding,
single-stranded DNA binding,
DNA_replication
| details | | CFinderM001871 | Steroid_biosynthesis
steroid biosynthetic process,
sterol_24-C-methyltransferase_activity
| details | | CFinderM001878 | isoprenoid biosynthetic process,
mRNA_surveillance_pathway
C2H2 Transcription_Regulator(from PlantTFDB)
fatty-acyl-CoA binding,
| details | | CFinderM001884 | single-stranded DNA binding,
DNA_replication
RNA processing,
| details | | CFinderM001886 | Steroid_biosynthesis
ubiquitin ligase complex,
sterol_24-C-methyltransferase_activity
dephosphorylation,
steroid biosynthetic process,
mRNA_surveillance_pathway
protein ubiquitination,
protein dephosphorylation,
| details | | CFinderM001897 | phosphatase activity,
mRNA_surveillance_pathway
dephosphorylation,
protein dephosphorylation,
protein ubiquitination,
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
ubiquitin ligase complex,
| details |
4.Expression profilings |
