|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Steroid_biosynthesis | 0.005737076 | KEGG | | RLK-Pelle_WAK_LRK10L-1 (from iTAK) | 0.019953893 | GFam | | TKL-Pl-6 (from iTAK) | 0.019953893 | GFam | | sterol_24-C-methyltransferase_activity | 0.021965888 | GO:0003838 | | protein serine/threonine kinase activity, | 0.025052438 | GO:0004674 | | protein phosphorylation, | 0.026550601 | GO:0006468 | | steroid biosynthetic process, | 0.026550601 | GO:0006694 | | single-stranded DNA binding, | 0.033798891 | GO:0003697 | | protein kinase activity, | 0.033798891 | GO:0004672 | | transferase activity, transferring phosphorus-containing groups, | 0.034893157 | GO:0016772 | | TKL-Pl-4 (from iTAK) | 0.0360124 | GFam | | GARP-G2-like Transcription_Regulator(from iTAK) | 0.040788539 | GFam | | G2-like Transcription_Regulator(from PlantTFDB) | 0.040788539 | GFam |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000600G0290 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | AT3G24715 (5.00E-118) | | PH01000775G0310 | mitochondrially targeted single-stranded DNA binding protein | AT4G11060 (9.40E-57) | | PH01000817G0010 | Protein kinase superfamily protein | AT1G18390 (2.00E-124) | | PH01001536G0490 | myb-like HTH transcriptional regulator family protein | AT2G01060 (4.60E-43) | | PH01002392G0140 | Target of Myb protein 1 | AT1G21380 (4.00E-114) | | PH01002476G0330 | Protein kinase superfamily protein | AT5G01850 (3.30E-88) | | PH01002882G0100 | - | - (-) | | PH01003039G0010 | sterol methyltransferase 1 | AT5G13710 (5.00E-165) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000006 | CAMK_CDPK (from iTAK)
transporter activity,
transport,
transmembrane transport,
polygalacturonase activity,
| details | | CFinderM000238 | Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
Phagosome
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
| details | | CFinderM000724 | HSF Transcription_Regulator(from PlantTFDB)
metabolic process,
sterol_24-C-methyltransferase_activity
Steroid_biosynthesis
protein kinase C-activating G-protein coupled receptor signaling pathway,
steroid biosynthetic process,
diacylglycerol kinase activity,
NAD+ kinase activity,
| details | | CFinderM000925 | Ribosome
translation,
fructose_6-phosphate_metabolic_process
Fructose_and_mannose_metabolism
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
structural constituent of ribosome,
large ribosomal subunit,
6-phosphofructokinase complex,
6-phosphofructokinase activity,
| details | | CFinderM001156 | single-stranded DNA binding,
DNA_replication
| details | | CFinderM001197 | Ribosome
translation,
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
L-ascorbic acid binding,
structural constituent of ribosome,
Arginine_and_proline_metabolism
| details | | CFinderM001213 | Lipoic_acid_metabolism
RLK-Pelle_CrRLK1L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
lipoate biosynthetic process,
chloroplast,
| details | | CFinderM001591 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
metabolic process,
branched chain family amino acid metabolic process,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
branched-chain-amino-acid transaminase activity,
transferase activity, transferring pentosyl groups,
steroid biosynthetic process,
histidine biosynthetic process,
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Histidine_metabolism
Steroid_biosynthesis
| details | | CFinderM001632 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
Ribosome
HSF Transcription_Regulator(from PlantTFDB)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
large ribosomal subunit,
| details | | CFinderM001656 | GH43 Glycoside_Hydrolases
TKL-Pl-6 (from iTAK)
GH35 Glycoside_Hydrolases
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
| details | | CFinderM001658 | Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
TKL-Pl-6 (from iTAK)
| details | | CFinderM001682 | RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
sterol_24-C-methyltransferase_activity
steroid biosynthetic process,
single-stranded DNA binding,
| details | | CFinderM001692 | TKL-Pl-4 (from iTAK)
carbohydrate phosphorylation,
Ribosome
translation,
galactose metabolic process,
intracellular,
galactokinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
structural constituent of ribosome,
kinase activity,
| details | | CFinderM001698 | Steroid_biosynthesis
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
single-stranded DNA binding,
protein tyrosine phosphatase activity,
protein tyrosine/serine/threonine phosphatase activity,
WRKY Transcription_Regulator(from PlantTFDB)
dephosphorylation,
steroid biosynthetic process,
| details | | CFinderM001699 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
sterol_24-C-methyltransferase_activity
5S rRNA binding,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
Steroid_biosynthesis
steroid biosynthetic process,
branched chain family amino acid metabolic process,
ion transport,
| details | | CFinderM001753 | Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
| details | | CFinderM001809 | Lipoic_acid_metabolism
TKL-Pl-6 (from iTAK)
chloroplast,
lipoate biosynthetic process,
lipoate synthase activity,
| details | | CFinderM001852 | calcium-dependent phospholipid binding,
single-stranded DNA binding,
DNA_replication
| details | | CFinderM001854 | HSF Transcription_Regulator(from PlantTFDB)
fatty-acyl-CoA binding,
| details | | CFinderM001871 | Steroid_biosynthesis
steroid biosynthetic process,
sterol_24-C-methyltransferase_activity
| details | | CFinderM001884 | single-stranded DNA binding,
DNA_replication
RNA processing,
| details | | CFinderM001886 | Steroid_biosynthesis
ubiquitin ligase complex,
sterol_24-C-methyltransferase_activity
dephosphorylation,
steroid biosynthetic process,
mRNA_surveillance_pathway
protein ubiquitination,
protein dephosphorylation,
| details |
4.Expression profilings |
