|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Lipoic_acid_metabolism | 0.001312172 | KEGG | | TKL-Pl-6 (from iTAK) | 0.002622908 | GFam | | chloroplast, | 0.01907992 | GO:0009507 | | lipoate biosynthetic process, | 0.019257797 | GO:0009107 | | lipoate synthase activity, | 0.043588576 | GO:0016992 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000092G1660 | Xanthine/uracil permease family protein | AT5G62890 (0.00E+00) | | PH01000423G0730 | Radical SAM superfamily protein | AT5G08415 (2.00E-135) | | PH01000451G0190 | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | AT4G11610 (0.00E+00) | | PH01000600G0290 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | AT3G24715 (5.00E-118) | | PH01001797G0400 | - | - (-) | | PH01004980G0030 | Protein phosphatase 2C family protein | AT3G51370 (5.00E-164) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000133 | C2H2 Transcription_Regulator(from PlantTFDB)
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
carbohydrate phosphorylation,
| details | | CFinderM000238 | Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
Phagosome
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM000557 | Lipoic_acid_metabolism
lipoate biosynthetic process,
nucleus,
chloroplast,
lipoate synthase activity,
DNA_replication
4 iron, 4 sulfur cluster binding,
| details | | CFinderM001062 | HSF Transcription_Regulator(from PlantTFDB)
NAD+ kinase activity,
diacylglycerol kinase activity,
protein kinase C-activating G-protein coupled receptor signaling pathway,
| details | | CFinderM001213 | Lipoic_acid_metabolism
RLK-Pelle_CrRLK1L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
lipoate biosynthetic process,
chloroplast,
| details | | CFinderM001215 | Valine,_leucine_and_isoleucine_biosynthesis
heme_a_biosynthetic_process
dihydroxy-acid dehydratase activity,
branched chain family amino acid biosynthetic process,
Pantothenate_and_CoA_biosynthesis
oxidoreductase activity, acting on the CH-CH group of donors,
Porphyrin_and_chlorophyll_metabolism
ubiquitin ligase complex,
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM001462 | ATP-dependent peptidase activity,
cellular process,
Endocytosis
| details | | CFinderM001471 | regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
WRKY Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001597 | Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
C3H Transcription_Regulator(from PlantTFDB)
membrane,
| details | | CFinderM001655 | transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
| details | | CFinderM001656 | GH43 Glycoside_Hydrolases
TKL-Pl-6 (from iTAK)
GH35 Glycoside_Hydrolases
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
| details | | CFinderM001658 | Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
TKL-Pl-6 (from iTAK)
| details | | CFinderM001683 | Steroid_biosynthesis
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
TKL-Pl-6 (from iTAK)
sterol_24-C-methyltransferase_activity
protein serine/threonine kinase activity,
protein phosphorylation,
steroid biosynthetic process,
single-stranded DNA binding,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
TKL-Pl-4 (from iTAK)
GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001703 | Endocytosis
regulation of ARF GTPase activity,
ARF GTPase activator activity,
| details | | CFinderM001735 | TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
| details | | CFinderM001753 | Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
| details | | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
| details | | CFinderM001854 | HSF Transcription_Regulator(from PlantTFDB)
fatty-acyl-CoA binding,
| details |
4.Expression profilings |
