CFinderADM000236's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Mitophagy - animal | 6.86E-09 | KEGG pathway |
| MAPK signaling pathway - fly | 0.000228524 | KEGG pathway |
| transcription factor TFIID complex | 0.000267216 | GO:0005669 |
| cytosol | 0.000267216 | GO:0005829 |
| THO complex part of transcription export complex | 0.000267216 | GO:0000445 |
| GMP synthase activity | 0.000329969 | GO:0003921 |
| GMP synthase (glutamine-hydrolyzing) activity | 0.000329969 | GO:0003922 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.000350533 | ubs family |
| cell plate | 0.000480251 | GO:0009504 |
| production of ta-siRNAs involved in RNA interference | 0.000494574 | GO:0010267 |
| regulation of ethylene-activated signaling pathway | 0.000494574 | GO:0010104 |
| GMP biosynthetic process | 0.000494574 | GO:0006177 |
| cytokinin-activated signaling pathway | 0.000888412 | GO:0009736 |
| mRNA export from nucleus | 0.000888412 | GO:0006406 |
| L-tryptophan biosynthesis | 0.000952305 | plantCyc |
| sphingolipid biosynthesis (plants) | 0.000952305 | plantCyc |
| regulation of vesicle fusion | 0.000960969 | GO:0031338 |
| activation of GTPase activity | 0.000960969 | GO:0090630 |
| cytokinesis by cell plate formation | 0.000960969 | GO:0000911 |
| DNA-templated transcription, initiation | 0.000996051 | GO:0006352 |
| Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family | 0.001213324 | kinase family |
| nuclear envelope | 0.001276088 | GO:0005635 |
| Insulin signaling pathway | 0.001536817 | KEGG pathway |
| protein import into nucleus | 0.002480862 | GO:0006606 |
| Rab GTPase binding | 0.002624926 | GO:0017137 |
| exocyst | 0.002646302 | GO:0000145 |
| jasmonic acid mediated signaling pathway | 0.003122538 | GO:0009867 |
| Ran GTPase binding | 0.004135823 | GO:0008536 |
| Basal transcription factors | 0.004143566 | KEGG pathway |
| GTPase activator activity | 0.006056293 | GO:0005096 |
| exocytosis | 0.006318575 | GO:0006887 |
| translational initiation | 0.009854666 | GO:0006413 |
| endomembrane system | 0.013482246 | GO:0012505 |
| protein transporter activity | 0.01423814 | GO:0008565 |
| small GTPase mediated signal transduction | 0.01553324 | GO:0007264 |
| protein heterodimerization activity | 0.016639866 | GO:0046982 |
| Endocytosis | 0.016844206 | KEGG pathway |
| signal transduction | 0.017255841 | GO:0007165 |
| translation initiation factor activity | 0.019577787 | GO:0003743 |
| transferase activity, transferring glycosyl groups | 0.022506371 | GO:0016757 |
| endosome | 0.023117188 | GO:0005768 |
| intracellular protein transport | 0.030201599 | GO:0006886 |
| Spliceosome | 0.037504274 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001924 | AT1G70570 (0) | anthranilate phosphoribosyltransferase, putative |
| CRO_T002110 | AT1G04790 (5.00E-25) | RING/U-box superfamily protein |
| CRO_T005461 | AT2G31660 (0) | EMA1|enhanced miRNA activity 1; SAD2|SUPER SENSITIVE TO ABA AND DROUGHT2; URM9|UNARMED 9 |
| CRO_T005485 | AT3G15880 (0) | TPR4|TOPLESS-RELATED 4; WSIP2|WUS-interacting protein 2 |
| CRO_T012573 | AT2G43770 (4.00E-18) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T017179 | - | - |
| CRO_T018270 | AT5G54780 (2.00E-18) | Ypt/Rab-GAP domain of gyp1p superfamily protein |
| CRO_T023114 | AT1G16270 (5.00E-17) | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain |
| CRO_T026292 | - | - |
| CRO_T027088 | AT3G10070 (5.00E-31) | TAF12|TBP-associated factor 12; TAFII58|TATA-ASSOCIATED FACTOR II 58 |
| CRO_T029170 | AT3G54020 (1.00E-62) | AtIPCS1|Arabidopsis Inositol phosphorylceramide synthase 1 |
| CRO_T032607 | AT1G09630 (1.00E-112) | ATRAB-A2A|ARABIDOPSIS RAB GTPASE A2A; ATRAB11C|RAB GTPase 11C; RAB-A2A|RAB GTPASE A2A |
| CRO_T033339 | AT3G51620 (1.00E-126) | PAP/OAS1 substrate-binding domain superfamily |
| CRO_T033546 | AT5G03540 (0) | ATEXO70A1|exocyst subunit exo70 family protein A1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000441 | Protein processing in endoplasmic reticulum ribonuclease inhibitor activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity oxaloacetate decarboxylase activity THO complex part of transcription export complex production of ta-siRNAs involved in RNA interference regulation of RNA metabolic process mRNA export from nucleus Protein_kinases_phosphatases, PPC:4.1.1: MAP3K receptor signaling protein serine/threonine kinase activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family signal transduction by protein phosphorylation negative regulation of catalytic activity Spliceosome plant-type cell wall methyltransferase activity serine-type endopeptidase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD Golgi apparatus methylation kinase activity ATP binding plasmodesma protein kinase activity proteolysis phosphorylation | details |
| CFinderADM000490 | Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase organelle organization Autophagy - animal Insulin signaling pathway response to starvation autophagy exocyst exocytosis single-organism cellular process cytoplasmic part protein phosphorylation protein kinase activity | details |
| CFinderADM000553 | MAPK signaling pathway - fly mitotic sister chromatid cohesion nuclear envelope protein import into nucleus Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family Transcription_related, Transcription regulator: SET Ran GTPase binding protein transporter activity signal transduction kinase activity phosphorylation Ubiquitin_Proteasome_system, E3: RING cytosol | details |
| CFinderADM000627 | aminoacyl-tRNA editing activity regulation of translational fidelity Aminoacyl-tRNA biosynthesis MAPK signaling pathway - fly valine-tRNA ligase activity valyl-tRNA aminoacylation isoleucyl-tRNA aminoacylation isoleucine-tRNA ligase activity mRNA processing embryo sac development protein import into nucleus Ran GTPase binding nuclear envelope cytosol rRNA processing protein transporter activity Ribosome biogenesis in eukaryotes signal transduction small-subunit processome ATP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD nucleolus RNA binding | details |
| CFinderADM000628 | Toll and Imd signaling pathway MAPK signaling pathway - fly isoleucyl-tRNA aminoacylation protein K63-linked ubiquitination postreplication repair regulation of translational fidelity isoleucine-tRNA ligase activity mRNA processing embryo sac development protein import into nucleus aminoacyl-tRNA editing activity nuclear envelope cytosol Ran GTPase binding rRNA processing Ubiquitin_Proteasome_system, E2: UBC Aminoacyl-tRNA biosynthesis ubiquitin protein ligase binding protein transporter activity signal transduction small-subunit processome ligase activity ubiquitin protein ligase activity nucleolus Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA binding | details |
| CFinderADM000904 | Spliceosome attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation meiotic sister chromatid cohesion, centromeric THO complex part of transcription export complex production of ta-siRNAs involved in RNA interference mRNA export from nucleus mRNA processing Cell cycle spliceosomal complex ATP-dependent helicase activity chromosome poly(A) RNA binding mRNA splicing, via spliceosome ATP-dependent RNA helicase activity ATP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3 adaptor: F-box nucleic acid binding | details |
| CFinderADM001066 | polyprenyltransferase activity acetyl-CoA C-acetyltransferase activity queuine tRNA-ribosyltransferase activity mevalonate pathway I ubiquinone biosynthetic process queuosine biosynthetic process integral component of mitochondrial inner membrane cell plate cytokinesis by cell plate formation isoprenoid biosynthetic process microtubule-severing ATPase activity Ubiquinone and other terpenoid-quinone biosynthesis small GTPase mediated signal transduction cell redox homeostasis Endocytosis endosome GTP binding metabolic process Carbon metabolism hydrolase activity | details |
| CFinderADM001140 | isoleucyl-tRNA aminoacylation MAPK signaling pathway - fly isoleucine-tRNA ligase activity regulation of translational fidelity aminoacyl-tRNA editing activity protein import into nucleus nuclear envelope cytosol Ran GTPase binding Transcription_related, Transcription regulator: SET protein transporter activity Aminoacyl-tRNA biosynthesis signal transduction Ribosome biogenesis in eukaryotes Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM001326 | Ubiquitin_Proteasome_system, E3 adaptor: DWD THO complex part of transcription export complex production of ta-siRNAs involved in RNA interference mRNA export from nucleus Spliceosome regulation of transcription, DNA-templated | details |
| CFinderADM001429 | protein kinase CK2 complex transcription factor TFIID complex peroxisomal membrane regulation of ethylene-activated signaling pathway peroxisome organization organelle organization protein kinase regulator activity cytokinin-activated signaling pathway regulation of protein kinase activity response to starvation DNA-templated transcription, initiation autophagy Ubiquitin_Proteasome_system, E2: UBC jasmonic acid mediated signaling pathway Autophagy - animal Basal transcription factors Peroxisome SNARE interactions in vesicular transport single-organism cellular process translational initiation Ribosome biogenesis in eukaryotes protein heterodimerization activity translation initiation factor activity cytoplasmic part kinase activity phosphorylation | details |
| CFinderADM001602 | protein kinase CK2 complex MAPK signaling pathway - fly protein kinase regulator activity regulation of protein kinase activity nuclear envelope Ran GTPase binding protein import into nucleus protein transporter activity Ribosome biogenesis in eukaryotes signal transduction kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc phosphorylation | details |
| CFinderADM001762 | cytokinesis by cell plate formation cell plate plasma membrane translational initiation small GTPase mediated signal transduction SNARE interactions in vesicular transport RNA degradation Endocytosis translation initiation factor activity RNA transport endosome GTP binding Golgi apparatus hydrolase activity integral component of membrane | details |
| CFinderADM001839 | regulation of G2/M transition of mitotic cell cycle histone monoubiquitination histone H2B ubiquitination seed dormancy process Ubiquitin_Proteasome_system, E3: RING defense response to fungus, incompatible interaction cytokinesis by cell plate formation cell plate cell growth leaf morphogenesis vegetative to reproductive phase transition of meristem protein peptidyl-prolyl isomerization cell division Endocytosis small GTPase mediated signal transduction protein folding peptidyl-prolyl cis-trans isomerase activity protein homodimerization activity ligase activity ubiquitin-protein transferase activity endosome GTP binding plasmodesma hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |