TissueCFM000082's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| lagging strand elongation | 0.006433793 | GO:0006273 |
| DNA ligation involved in DNA repair | 0.006433793 | GO:0051103 |
| actin cytoskeleton organization | 0.006433793 | GO:0030036 |
| protein ADP-ribosylation | 0.006433793 | GO:0006471 |
| Autophagy - yeast | 0.006903152 | KEGG pathway |
| Base excision repair | 0.006903152 | KEGG pathway |
| Cul3-RING ubiquitin ligase complex | 0.009105005 | GO:0031463 |
| pollen tube tip | 0.009105005 | GO:0090404 |
| pollen tube growth | 0.010930176 | GO:0009860 |
| DNA ligase (ATP) activity | 0.016082105 | GO:0003910 |
| NAD+ ADP-ribosyltransferase activity | 0.016082105 | GO:0003950 |
| cytoplasm | 0.022512909 | GO:0005737 |
| nucleus | 0.031104659 | GO:0005634 |
| membrane | 0.031104659 | GO:0016020 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.036841041 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T011864 | AT2G31320 (0) | PARP1|POLY(ADP-RIBOSE) POLYMERASE 1 |
| CRO_T012630 | AT5G42560 (2.00E-53) | Abscisic acid-responsive (TB2/DP1, HVA22) family protein |
| CRO_T022785 | - | - |
| CRO_T024672 | AT2G41190 (4.00E-12) | Transmembrane amino acid transporter family protein |
| CRO_T024851 | AT3G27150 (8.00E-24) | Galactose oxidase/kelch repeat superfamily protein |
| CRO_T028944 | AT4G34940 (2.00E-107) | ARO1|armadillo repeat only 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000045 | DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation Base excision repair DNA integration DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity | details |
| TissueCFM000174 | regulation of post-embryonic root development stem cell division regulation of ethylene biosynthetic process DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation cellular response to phosphate starvation Base excision repair NF-kappa B signaling pathway NAD+ ADP-ribosyltransferase activity monovalent cation:proton antiporter activity binding DNA ligase (ATP) activity protein binding, bridging regulation of pH Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TissueCFM000393 | homogalacturonan biosynthesis DNA ligation involved in DNA repair lagging strand elongation protein ADP-ribosylation pectin biosynthetic process Base excision repair formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: TCP Ubiquitin_Proteasome_system, DUB: OTU | details |
| TissueCFM000531 | homogalacturonan biosynthesis DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation pectin biosynthetic process | details |
| TissueCFM000915 | formation of glycosidic bonds, GlycosylTransferases: GTnc negative regulation of nucleic acid-templated transcription regulation of jasmonic acid mediated signaling pathway regulation of defense response DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation response to wounding cellular macromolecule metabolic process potassium ion binding pyruvate kinase activity transcription corepressor activity DNA ligase (ATP) activity ubiquitin binding NAD+ ADP-ribosyltransferase activity ADP binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt xylan biosynthesis primary metabolic process glycolytic process Base excision repair defense response | details |
Expression profiles
 Show details about module gene expression profiling |