TissueCFM000531's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| homogalacturonan biosynthesis | 0.015486058 | plantCyc |
| DNA ligation involved in DNA repair | 0.027724742 | GO:0051103 |
| protein ADP-ribosylation | 0.027724742 | GO:0006471 |
| lagging strand elongation | 0.027724742 | GO:0006273 |
| pectin biosynthetic process | 0.033732222 | GO:0045489 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003722 | - | - |
| CRO_T005582 | - | - |
| CRO_T007811 | - | - |
| CRO_T008144 | - | - |
| CRO_T008620 | - | - |
| CRO_T009912 | - | - |
| CRO_T010914 | - | - |
| CRO_T011864 | AT2G31320 (0) | PARP1|POLY(ADP-RIBOSE) POLYMERASE 1 |
| CRO_T015540 | - | - |
| CRO_T018360 | - | - |
| CRO_T018647 | - | - |
| CRO_T019599 | - | - |
| CRO_T021535 | AT1G51910 (4.00E-29) | Leucine-rich repeat protein kinase family protein |
| CRO_T022450 | - | - |
| CRO_T022642 | - | - |
| CRO_T024458 | - | - |
| CRO_T027068 | - | - |
| CRO_T027490 | - | - |
| CRO_T029222 | AT3G02350 (0) | GAUT9|galacturonosyltransferase 9 |
| CRO_T029460 | AT1G22110 (4.00E-22) | structural constituent of ribosome |
| CRO_T032508 | - | - |
| CRO_T032537 | - | - |
| CRO_T032551 | - | - |
| CRO_T033166 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000045 | DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation Base excision repair DNA integration DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity | details |
| TissueCFM000082 | lagging strand elongation DNA ligation involved in DNA repair actin cytoskeleton organization protein ADP-ribosylation Autophagy - yeast Base excision repair Cul3-RING ubiquitin ligase complex pollen tube tip pollen tube growth DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity cytoplasm nucleus membrane Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TissueCFM000154 | homogalacturonan biosynthesis inorganic anion exchanger activity regulation of intracellular pH anion transmembrane transport pectin biosynthetic process inorganic anion transport polygalacturonate 4-alpha-galacturonosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: PHD Amino sugar and nucleotide sugar metabolism Endocytosis small GTPase mediated signal transduction | details |
| TissueCFM000174 | regulation of post-embryonic root development stem cell division regulation of ethylene biosynthetic process DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation cellular response to phosphate starvation Base excision repair NF-kappa B signaling pathway NAD+ ADP-ribosyltransferase activity monovalent cation:proton antiporter activity binding DNA ligase (ATP) activity protein binding, bridging regulation of pH Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TissueCFM000393 | homogalacturonan biosynthesis DNA ligation involved in DNA repair lagging strand elongation protein ADP-ribosylation pectin biosynthetic process Base excision repair formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: TCP Ubiquitin_Proteasome_system, DUB: OTU | details |
| TissueCFM000751 | chorismate synthase activity chorismate biosynthesis from 3-dehydroquinate L-methionine salvage cycle II (plants) ethylene biosynthesis I (plants) 1-aminocyclopropane-1-carboxylate biosynthetic process 1-aminocyclopropane-1-carboxylate synthase activity chorismate biosynthetic process aromatic amino acid family biosynthetic process Transcription_related, Transcription factor: C2C2-Dof cellular amino acid biosynthetic process FMN binding Biosynthesis of amino acids Cysteine and methionine metabolism Endocytosis | details |
| TissueCFM000915 | formation of glycosidic bonds, GlycosylTransferases: GTnc negative regulation of nucleic acid-templated transcription regulation of jasmonic acid mediated signaling pathway regulation of defense response DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation response to wounding cellular macromolecule metabolic process potassium ion binding pyruvate kinase activity transcription corepressor activity DNA ligase (ATP) activity ubiquitin binding NAD+ ADP-ribosyltransferase activity ADP binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt xylan biosynthesis primary metabolic process glycolytic process Base excision repair defense response | details |
Expression profiles
 Show details about module gene expression profiling |