TissueCFM000393's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| homogalacturonan biosynthesis | 0.010995362 | plantCyc |
| DNA ligation involved in DNA repair | 0.019656632 | GO:0051103 |
| lagging strand elongation | 0.019656632 | GO:0006273 |
| protein ADP-ribosylation | 0.019656632 | GO:0006471 |
| pectin biosynthetic process | 0.023928235 | GO:0045489 |
| Base excision repair | 0.035967832 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.049814049 | cazy family |
| Transcription_related, Transcription factor: TCP | 0.049814049 | TF family |
| Ubiquitin_Proteasome_system, DUB: OTU | 0.049814049 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004529 | - | - |
| CRO_T010505 | - | - |
| CRO_T011560 | - | - |
| CRO_T011864 | AT2G31320 (0) | PARP1|POLY(ADP-RIBOSE) POLYMERASE 1 |
| CRO_T011927 | - | - |
| CRO_T012609 | - | - |
| CRO_T013665 | - | - |
| CRO_T014718 | - | - |
| CRO_T014921 | - | - |
| CRO_T017847 | - | - |
| CRO_T019313 | - | - |
| CRO_T019702 | - | - |
| CRO_T020826 | - | - |
| CRO_T021535 | AT1G51910 (4.00E-29) | Leucine-rich repeat protein kinase family protein |
| CRO_T023153 | - | - |
| CRO_T024102 | - | - |
| CRO_T029222 | AT3G02350 (0) | GAUT9|galacturonosyltransferase 9 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000045 | DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation Base excision repair DNA integration DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity | details |
| TissueCFM000082 | lagging strand elongation DNA ligation involved in DNA repair actin cytoskeleton organization protein ADP-ribosylation Autophagy - yeast Base excision repair Cul3-RING ubiquitin ligase complex pollen tube tip pollen tube growth DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity cytoplasm nucleus membrane Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TissueCFM000154 | homogalacturonan biosynthesis inorganic anion exchanger activity regulation of intracellular pH anion transmembrane transport pectin biosynthetic process inorganic anion transport polygalacturonate 4-alpha-galacturonosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: PHD Amino sugar and nucleotide sugar metabolism Endocytosis small GTPase mediated signal transduction | details |
| TissueCFM000174 | regulation of post-embryonic root development stem cell division regulation of ethylene biosynthetic process DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation cellular response to phosphate starvation Base excision repair NF-kappa B signaling pathway NAD+ ADP-ribosyltransferase activity monovalent cation:proton antiporter activity binding DNA ligase (ATP) activity protein binding, bridging regulation of pH Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TissueCFM000531 | homogalacturonan biosynthesis DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation pectin biosynthetic process | details |
| TissueCFM000751 | chorismate synthase activity chorismate biosynthesis from 3-dehydroquinate L-methionine salvage cycle II (plants) ethylene biosynthesis I (plants) 1-aminocyclopropane-1-carboxylate biosynthetic process 1-aminocyclopropane-1-carboxylate synthase activity chorismate biosynthetic process aromatic amino acid family biosynthetic process Transcription_related, Transcription factor: C2C2-Dof cellular amino acid biosynthetic process FMN binding Biosynthesis of amino acids Cysteine and methionine metabolism Endocytosis | details |
| TissueCFM000915 | formation of glycosidic bonds, GlycosylTransferases: GTnc negative regulation of nucleic acid-templated transcription regulation of jasmonic acid mediated signaling pathway regulation of defense response DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation response to wounding cellular macromolecule metabolic process potassium ion binding pyruvate kinase activity transcription corepressor activity DNA ligase (ATP) activity ubiquitin binding NAD+ ADP-ribosyltransferase activity ADP binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt xylan biosynthesis primary metabolic process glycolytic process Base excision repair defense response | details |
Expression profiles
 Show details about module gene expression profiling |