TissueCFM000915's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000886394 | cazy family |
| negative regulation of nucleic acid-templated transcription | 0.007850208 | GO:1903507 |
| regulation of jasmonic acid mediated signaling pathway | 0.007850208 | GO:2000022 |
| regulation of defense response | 0.007850208 | GO:0031347 |
| DNA ligation involved in DNA repair | 0.007850208 | GO:0051103 |
| protein ADP-ribosylation | 0.007850208 | GO:0006471 |
| lagging strand elongation | 0.007850208 | GO:0006273 |
| response to wounding | 0.012609882 | GO:0009611 |
| cellular macromolecule metabolic process | 0.013237441 | GO:0044260 |
| potassium ion binding | 0.015870142 | GO:0030955 |
| pyruvate kinase activity | 0.015870142 | GO:0004743 |
| transcription corepressor activity | 0.015870142 | GO:0003714 |
| DNA ligase (ATP) activity | 0.015870142 | GO:0003910 |
| ubiquitin binding | 0.015870142 | GO:0043130 |
| NAD+ ADP-ribosyltransferase activity | 0.015870142 | GO:0003950 |
| ADP binding | 0.016738418 | GO:0043531 |
| glycolysis I (from glucose 6-phosphate) | 0.019505234 | plantCyc |
| glycolysis IV (plant cytosol) | 0.019505234 | plantCyc |
| Rubisco shunt | 0.019505234 | plantCyc |
| xylan biosynthesis | 0.019505234 | plantCyc |
| primary metabolic process | 0.022323556 | GO:0044238 |
| glycolytic process | 0.022323556 | GO:0006096 |
| Base excision repair | 0.023367968 | KEGG pathway |
| defense response | 0.043121374 | GO:0006952 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007726 | AT1G16190 (1.00E-84) | RAD23A|RADIATION SENSITIVE23A |
| CRO_T011864 | AT2G31320 (0) | PARP1|POLY(ADP-RIBOSE) POLYMERASE 1 |
| CRO_T015636 | AT3G22960 (9.00E-168) | PKP1|PLASTIDIAL PYRUVATE KINASE 1 |
| CRO_T016223 | AT1G58400 (3.00E-73) | Disease resistance protein (CC-NBS-LRR class) family |
| CRO_T019492 | AT4G32570 (2.00E-16) | TIFY8|TIFY domain protein 8 |
| CRO_T020017 | AT1G27600 (1.00E-46) | I9H|IRREGULAR XYLEM 9 Homolog; IRX9-L|IRREGULAR XYLEM 9-LIKE |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000045 | DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation Base excision repair DNA integration DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity | details |
| TissueCFM000070 | Transcription_related, Transcription factor: G2-like | details |
| TissueCFM000082 | lagging strand elongation DNA ligation involved in DNA repair actin cytoskeleton organization protein ADP-ribosylation Autophagy - yeast Base excision repair Cul3-RING ubiquitin ligase complex pollen tube tip pollen tube growth DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity cytoplasm nucleus membrane Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TissueCFM000174 | regulation of post-embryonic root development stem cell division regulation of ethylene biosynthetic process DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation cellular response to phosphate starvation Base excision repair NF-kappa B signaling pathway NAD+ ADP-ribosyltransferase activity monovalent cation:proton antiporter activity binding DNA ligase (ATP) activity protein binding, bridging regulation of pH Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TissueCFM000393 | homogalacturonan biosynthesis DNA ligation involved in DNA repair lagging strand elongation protein ADP-ribosylation pectin biosynthetic process Base excision repair formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: TCP Ubiquitin_Proteasome_system, DUB: OTU | details |
| TissueCFM000469 | formation of glycosidic bonds, GlycosylTransferases: GTnc potassium ion binding ubiquitin binding pyruvate kinase activity glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt xylan biosynthesis cellular macromolecule metabolic process glycolytic process primary metabolic process flavonoid glucuronidation flavonoid biosynthetic process Transcription_related, Transcription factor: FAR1 | details |
| TissueCFM000531 | homogalacturonan biosynthesis DNA ligation involved in DNA repair protein ADP-ribosylation lagging strand elongation pectin biosynthetic process | details |
| TissueCFM000549 | protein phosphorylation Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) protein kinase activity ATP binding Protein_kinases_phosphatases, PPC:1.15.2: Leucine Rich Repeat Kinase VI Transcription_related, Transcription regulator: MBF1 Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase integral component of membrane protein phosphatase type 2A complex plasma membrane nuclear chromatin | details |
| TissueCFM001218 | xylan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc regulation of defense response negative regulation of nucleic acid-templated transcription regulation of jasmonic acid mediated signaling pathway response to wounding transcription corepressor activity Transcription_related, Transcription factor: B3 ADP binding ribosome biogenesis defense response | details |
Expression profiles
 Show details about module gene expression profiling |