TissueCFM000995's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase | 0.007793354 | kinase family |
| trans-Golgi network | 0.00988634 | GO:0005802 |
| late endosome to vacuole transport | 0.014124988 | GO:0045324 |
| secretion by cell | 0.014124988 | GO:0032940 |
| developmental growth | 0.014124988 | GO:0048589 |
| early endosome | 0.023574895 | GO:0005769 |
| RNA degradation | 0.023796563 | KEGG pathway |
| negative regulation of abscisic acid-activated signaling pathway | 0.024689532 | GO:0009788 |
| protein phosphorylation | 0.048623792 | GO:0006468 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002381 | - | - |
| CRO_T005399 | AT4G32920 (0) | glycine-rich protein |
| CRO_T006173 | AT5G42090 (0) | Lung seven transmembrane receptor family protein |
| CRO_T009636 | AT1G80930 (8.00E-85) | MIF4G domain-containing protein / MA3 domain-containing protein |
| CRO_T017288 | AT3G23270 (5.00E-22) | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| CRO_T022631 | - | - |
| CRO_T026803 | AT2G30800 (4.00E-25) | HVT1|helicase in vascular tissue and tapetum |
| CRO_T026820 | - | - |
| CRO_T028191 | AT2G44700 (8.00E-23) | Galactose oxidase/kelch repeat superfamily protein |
| CRO_T029825 | AT3G13530 (2.00E-47) | MAP3KE1|MAP3K EPSILON PROTEIN KINASE; MAPKKK7|mitogen-activated protein kinase kinase kinase 7 |
| CRO_T033036 | AT3G47660 (4.00E-20) | Regulator of chromosome condensation (RCC1) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000265 | details | |
| TissueCFM000405 | N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation NatA complex peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity Glucagon signaling pathway cytosolic ribosome Transcription_related, Transcription regulator: GNAT ATP-dependent helicase activity RNA degradation | details |
| TissueCFM000431 | Photosynthesis phosphate ion binding low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport | details |
| TissueCFM000437 | Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Ubiquitin_Proteasome_system, DUB: USP receptor signaling protein serine/threonine kinase activity single-organism process Transcription_related, Transcription factor: HB chromosome | details |
| TissueCFM000438 | eukaryotic translation initiation factor 2 complex multi-eIF complex mitochondrial translation aminoacyl-tRNA hydrolase activity eukaryotic translation initiation factor 2B complex ribosome binding Transcription_related, Transcription factor: HB translational initiation eukaryotic 48S preinitiation complex translation initiation factor activity RNA transport | details |
| TissueCFM000606 | details | |
| TissueCFM000705 | Transcription_related, Transcription factor: NAC | details |
| TissueCFM000853 | cyclic pyranopterin monophosphate synthase activity Mo-molybdopterin cofactor biosynthetic process molybdopterin cofactor biosynthetic process Folate biosynthesis Basal transcription factors | details |
| TissueCFM000887 | CMP-3-deoxy-D-manno-octulosonate biosynthesis Lipopolysaccharide biosynthesis Basal transcription factors SNARE interactions in vesicular transport cis-Golgi network | details |
| TissueCFM000923 | Transcription_related, Transcription factor: CAMTA Cell cycle Viral carcinogenesis lateral root formation inflorescence morphogenesis chromosome organization response to fungus photomorphogenesis auxin polar transport unidimensional cell growth response to auxin | details |
| TissueCFM000924 | Ubiquitin_Proteasome_system, E3: HECT lateral root formation trichome branching inflorescence morphogenesis response to fungus chromosome organization DNA endoreduplication photomorphogenesis regulation of translational initiation formation of translation preinitiation complex auxin polar transport unidimensional cell growth response to auxin protein ubiquitination involved in ubiquitin-dependent protein catabolic process Cell cycle Viral carcinogenesis chromosome eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex | details |
| TissueCFM001105 | Basal transcription factors cyclic pyranopterin monophosphate synthase activity Mo-molybdopterin cofactor biosynthetic process molybdopterin cofactor biosynthetic process Folate biosynthesis | details |
| TissueCFM001298 | L-tryptophan biosynthesis Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Transcription_related, Transcription factor: CAMTA GMP biosynthetic process GMP synthase (glutamine-hydrolyzing) activity GMP synthase activity Transcription_related, Transcription factor: SBP Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Ubiquitin_Proteasome_system, DUB: USP | details |
| TissueCFM001359 | [2Fe-2S] cluster assembly acetyl-CoA biosynthetic process from acetate biotin biosynthesis from 8-amino-7-oxononanoate I L-alanine biosynthesis III molybdenum cofactor biosynthesis acetate-CoA ligase activity cysteine desulfurase activity AMP binding Thiamine metabolism Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription factor: B3 | details |
| TissueCFM001430 | intrinsic component of membrane COPII vesicle coat positive regulation of biological process glycerophospholipid metabolic process red or far-red light signaling pathway response to far red light xylan biosynthetic process Transcription_related, Transcription factor: FAR1 Fanconi anemia pathway Glycerophospholipid metabolism diacylglycerol and triacylglycerol biosynthesis phosphatidylcholine acyl editing phospholipid remodeling (phosphatidylcholine, yeast) DNA metabolic process ER to Golgi vesicle-mediated transport O-acyltransferase activity heterocyclic compound binding organic cyclic compound binding | details |
Expression profiles
 Show details about module gene expression profiling |